BAC Information

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BAC

Clone NameMSMg01-176L19
Chromosome1 (Build37)
Map Location 34,663,731 - 34,802,688
singlet/doubletdoublet
Overlap geneAA619741
Upstream genePrim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik
Downstream geneArhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176L19.T7 (MSMg01no176_l19.b1)MSMg01-176L19.TJ (MSMg01no176_l19.g1)
ACCAG371344AG371345
length1,2571,279
length of high quality
(start - end)
603 (88 - 690)383 (73 - 455)
definitionCHROMAT_FILE: MSMg01no176_l19.b1 PHD_FILE: MSMg01no176_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:51 2005CHROMAT_FILE: MSMg01no176_l19.g1 PHD_FILE: MSMg01no176_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:52 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(34,663,731 - 34,664,333)(34,802,308 - 34,802,688)
sequence
CCATTCCTNNNNAACCATTGGCGCTAAGACTACTAAGGGAGAGGATCCGC
GGAATTCCCAGTGACACCACTTCCCCTTATAAACAGGCTGCCATTCTCTG
GGTTCTCATATGACCCTTACTTCTTTCTATCACACTAAACTCCTATCCAA
GGGACACAATCTGTCCCTGCCTCCCTACAGGAGGCCAGTCTCTAAACACT
ATTCTCCAGGTGTGAGGGCCTTACCATTTCAATCTGGGGAAGATTCAAGG
ATGGAACCCTTTTGAGCAACAGACTGTAAAATAACCCTTAAAGATAAGCC
TTTATTCTCTCCTCTGCCTGTTCTATGGCTCCTCTCCGTTTGCAAACAGT
TTGCAATCAGGTTATTGCCCAAATGGCAAGGGGCACTACTCCTGCGAGTT
TGCTGTTGTTCATACAAGGGACAGCCACAGAAGAATACCGGAGGGTTTCA
CTCTAACCGAGACTCCCATTCAGGAGACAACAGAAGGAAATGAAGCTCTT
GGTCCCCAACTGCCATTTCAGTAAGGTGCACTTGATGGTCATGCCAAAGT
CTATCAGTTTTATATTACTCTATGCATTTCTTAGGATACTATGGGAGATT
ATATCTCTATGGACAATGTCAAGATTATACTAGTACTTTATGACTGACAC
AAAATACCCGAATATATTCTTTGCCTCTTCCTCTTGTAGTGGGCCAGCTT
CCATTATCAGTTCAAAGAAGTTTCATCCTGGAGCGTACTGAGTAAACAGA
TGGACCCGTTTTGATGTTACTAGAACCTGAAAGCGGCTAATGATGTTACT
ATGGTGAAGTGTCTCCCATGTTGCTATTTCTGACAGGATCCTACTTATGG
GCTTTTTCATGATCTCTTCAGTTTCTAGGTTCACCATTCCCTGATTTTTT
CTGTAGAATGCGTAAATCTTTTTGTCCAATGTCTTCTGTCCTAATTGTAA
TACCAACATTACCTTTTTCCCTTGGATTGGTTCTTTCTGGAACTTCCTGA
CTTCATTTACATTCTTTTTANAANNNNCCCCCAANCACACCCCCAAAACC
AAACACCACCACCCACCCCCACACCCATATCTTTACCATTCTTTTTAACA
TCCCTCTCTTATCTTTCTTACCATAATCATTTCACAATTATACTCTTCAC
ATTTATTTTTCCTTCTCATTTCATTTNTATTCTCTATTATTCTCTTAATT
TTATACTCTCCCTCTTTTCTCTTCCTACTCATTTCCTATACCTCTTTCCC
CTTTTTC
NNNCCGGAGATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCCTCTGAGACCTGTAAGAAGGGAC
CCTCACTCTGCCTACAGGCATGAGCTCTTGCCGTAGCCCCCGCCATGCTG
ACCTTTCCTGAAGTTAATAACTCTTCTGATAAATATCTTACTCAAAAGAA
CAATTTGTCTGTGTTCCTCTTGAAGCCAGACCCGAGACCTTTCATAGCCT
GGCCAGAGGACTCAGTTATCATAGCAGCATCTGCCCAGTGCTGCCCCTGC
CCCTTCTTTGGGTACCAGGTGGTCCTTAATAGTTGAAGGAATGAGACCAC
TGTCAAAGTCTCTCACCTTTGGACTGCGTCTCCCTGACAAGCAGGCGTAG
CTTTCTCCAGACTCACCCCCGTCCTTAACAGCACACCCAGAAATATGGCA
AGATTTTTTTTCACAGCTCACCAGTGTCAGACGTGCGCTCTGAACAGGCT
GTGTGGTCCAGTCCCATTGGGGCACTCTGGGAGAGCAGATGGCTTCTTCT
AGGAAGATGCGGAGACTCTGGAGAGGTGATGGTTGTCTTCCTCCAGCACT
GGGGTAGGAGGCAAGAGGCAGAAGGCAAATGAAGAGACCGACCACGGGCT
ATTGGTACCAATTTCTAGCTTATCCAGTTGCCCAGATTCGTGAGCAAAGT
CCACAACCAAAACAGACACTATTCTAAGAAGGACTGTTTATACTGAAACC
CATGAGGGCGGTGACTCCTGAAGTCTGCAGTGTGTGATAACAGATCTGCA
TCTCCTGGTGCTACAGGTTGCTTTCATTTATGTGCACTAACACCTGTATA
GGCATGCCTTAAACCACCCCTTATTTCCCATTCCTTCCTAAAGCCTCGTA
TTTTCTCTGTAAGAAAACCTCGACTCTTTTACTGAACTCCTTATTTTTTG
TGGTTACTTAACAATATAATTTCTTTCTCCCGCGTCCATCTTCTTCCCCT
CATACCTTGTTCTTAATCTAACTATCTCCTCCTCTCTTTCTCCTCTCATC
AACTCTTCGTTTTCATCTTCCTTTCCCCTTTAATCATTCTTACACCTCTT
TCCTCCCCTCCTTTTCCACCTTCTCTTACTTATATCCCCCTCCTCTCTTT
CTCTACTTCCTTTCTTTCTTCTTTGCTCACTTTTCTCATTATTCTCTTCC
CTTCTTGCTAACCCCTCTCTTCCCTTCTTCCCTCTCTCTCCATTCTCTTT
ACCTCTCTCCCTCTTTTTTCCCTATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_l19.b1 MSMg01no176_l19.b1 CHROMAT_FILE:
MSMg01no176_l19.b1 PHD_FILE: MSMg01no176_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:51 2005
         (603 letters)



>mm_chr1_34663531_34664533
          Length = 1003

 Score = 1089 bits (563), Expect = 0.0
 Identities = 593/607 (97%), Gaps = 8/607 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccattctctgggttctcatatgaccctta----cttctttctatcacactaaactcc 56
           |||||||||||||||||||||||||||    |    ||||||||||||||||||||||||
Sbjct: 201 ctgccattctctgggttctcatatgac----agggacttctttctatcacactaaactcc 256

                                                                       
Query: 57  tatccaagggacacaatctgtccctgcctccctacaggaggccagtctctaaacactatt 116
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tatccaagggacaaaatctgtccctgcctccctacaggaggccagtctctaaacactatt 316

                                                                       
Query: 117 ctccaggtgtgagggccttaccatttcaatctggggaagattcaaggatggaaccctttt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctccaggtgtgagggccttaccatttcaatctggggaagattcaaggatggaaccctttt 376

                                                                       
Query: 177 gagcaacagactgtaaaataacccttaaagataagcctttattctctcctctgcctgttc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gagcaacagactgtaaaataacccttaaagataagcctttattctctcctctgcctgttc 436

                                                                       
Query: 237 tatggctcctctccgtttgcaaacagtttgcaatcaggttattgcccaaatggcaagggg 296
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 437 tatggctcctctccgtttgcaaacagtttgcaatcagattattgcccaaatggcaagggg 496

                                                                       
Query: 297 cactactcctgcgagtttgctgttgttcatacaagggacagccacagaagaataccggag 356
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 497 cactactcctgcgagtttgctgttgctcatacaagggacagccacagaagaataccggag 556

                                                                       
Query: 357 ggtttcactctaaccgagactcccattcaggagacaacagaaggaaatgaagctcttggt 416
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 557 ggtttcacactaaccgagactcccattcaggagacaacagaaggaaatgaagcccttggt 616

                                                                       
Query: 417 ccccaactgccatttcagtaaggtgcacttgatggtcatgccaaagtctatcagttttat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccccaactgccatttcagtaaggtgcacttgatggtcatgccaaagtctatcagttttat 676

                                                                       
Query: 477 attactctatgcatttcttaggatactatgggagattatatctctatggacaatgtcaag 536
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 attactctatacatttcttaggatactatgggagattatatctctatggacaatgtcaag 736

                                                                       
Query: 537 attatactagtactttatgactgacacaaaatacccgaatatattctttgcctcttcctc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attatactagtactttatgactgacacaaaatacccgaatatattctttgcctcttcctc 796

                  
Query: 597 ttgtagt 603
           |||||||
Sbjct: 797 ttgtagt 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no176_l19.g1 MSMg01no176_l19.g1 CHROMAT_FILE:
MSMg01no176_l19.g1 PHD_FILE: MSMg01no176_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:52 2005
         (383 letters)



>mm_chr1_34802107_34802890
          Length = 784

 Score =  683 bits (353), Expect = 0.0
 Identities = 374/381 (98%), Gaps = 1/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   cttcctctgagacctgtaagaagggaccctcactctgcc-tacaggcatgagctcttgcc 60
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 582 cttcctctgagacctgtaagaagggaccctcactctgccacacaggcatgagctcttgcc 523

                                                                       
Query: 61  gtagcccccgccatgctgacctttcctgaagttaataactcttctgataaatatcttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtagcccccgccatgctgacctttcctgaagttaataactcttctgataaatatcttact 463

                                                                       
Query: 121 caaaagaacaatttgtctgtgttcctcttgaagccagacccgagacctttcatagcctgg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 462 caaaagaacaatttgtctgtgttcttcttgaagccagacccgagacctttcatagcctgg 403

                                                                       
Query: 181 ccagaggactcagttatcatagcagcatctgcccagtgctgcccctgccccttctttggg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ccagaggactcagtcatcatagcagcatctgcccagtgctgcccctgccccttctttggg 343

                                                                       
Query: 241 taccaggtggtccttaatagttgaaggaatgagaccactgtcaaagtctctcacctttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taccaggtggtccttaatagttgaaggaatgagaccactgtcaaagtctctcacctttgg 283

                                                                       
Query: 301 actgcgtctccctgacaagcaggcgtagctttctccagactcacccccgtccttaacagc 360
           ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 282 actgcttctccctgacaagcaggcgtagctttcaccagactcacccctgtccttaacagc 223

                                
Query: 361 acacccagaaatatggcaaga 381
           |||||||||||||||||||||
Sbjct: 222 acacccagaaatatggcaaga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 784
Length adjustment: 9
Effective length of query: 374
Effective length of database: 775
Effective search space:   289850
Effective search space used:   289850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)