Query= MSMg01no176_l19.b1 MSMg01no176_l19.b1 CHROMAT_FILE:
MSMg01no176_l19.b1 PHD_FILE: MSMg01no176_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:51 2005
(603 letters)
>mm_chr1_34663531_34664533
Length = 1003
Score = 1089 bits (563), Expect = 0.0
Identities = 593/607 (97%), Gaps = 8/607 (1%)
Strand = Plus / Plus
Query: 1 ctgccattctctgggttctcatatgaccctta----cttctttctatcacactaaactcc 56
||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 201 ctgccattctctgggttctcatatgac----agggacttctttctatcacactaaactcc 256
Query: 57 tatccaagggacacaatctgtccctgcctccctacaggaggccagtctctaaacactatt 116
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tatccaagggacaaaatctgtccctgcctccctacaggaggccagtctctaaacactatt 316
Query: 117 ctccaggtgtgagggccttaccatttcaatctggggaagattcaaggatggaaccctttt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctccaggtgtgagggccttaccatttcaatctggggaagattcaaggatggaaccctttt 376
Query: 177 gagcaacagactgtaaaataacccttaaagataagcctttattctctcctctgcctgttc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gagcaacagactgtaaaataacccttaaagataagcctttattctctcctctgcctgttc 436
Query: 237 tatggctcctctccgtttgcaaacagtttgcaatcaggttattgcccaaatggcaagggg 296
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 437 tatggctcctctccgtttgcaaacagtttgcaatcagattattgcccaaatggcaagggg 496
Query: 297 cactactcctgcgagtttgctgttgttcatacaagggacagccacagaagaataccggag 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 497 cactactcctgcgagtttgctgttgctcatacaagggacagccacagaagaataccggag 556
Query: 357 ggtttcactctaaccgagactcccattcaggagacaacagaaggaaatgaagctcttggt 416
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 557 ggtttcacactaaccgagactcccattcaggagacaacagaaggaaatgaagcccttggt 616
Query: 417 ccccaactgccatttcagtaaggtgcacttgatggtcatgccaaagtctatcagttttat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccccaactgccatttcagtaaggtgcacttgatggtcatgccaaagtctatcagttttat 676
Query: 477 attactctatgcatttcttaggatactatgggagattatatctctatggacaatgtcaag 536
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 attactctatacatttcttaggatactatgggagattatatctctatggacaatgtcaag 736
Query: 537 attatactagtactttatgactgacacaaaatacccgaatatattctttgcctcttcctc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attatactagtactttatgactgacacaaaatacccgaatatattctttgcctcttcctc 796
Query: 597 ttgtagt 603
|||||||
Sbjct: 797 ttgtagt 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_l19.g1 MSMg01no176_l19.g1 CHROMAT_FILE:
MSMg01no176_l19.g1 PHD_FILE: MSMg01no176_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:52 2005
(383 letters)
>mm_chr1_34802107_34802890
Length = 784
Score = 683 bits (353), Expect = 0.0
Identities = 374/381 (98%), Gaps = 1/381 (0%)
Strand = Plus / Minus
Query: 2 cttcctctgagacctgtaagaagggaccctcactctgcc-tacaggcatgagctcttgcc 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 582 cttcctctgagacctgtaagaagggaccctcactctgccacacaggcatgagctcttgcc 523
Query: 61 gtagcccccgccatgctgacctttcctgaagttaataactcttctgataaatatcttact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtagcccccgccatgctgacctttcctgaagttaataactcttctgataaatatcttact 463
Query: 121 caaaagaacaatttgtctgtgttcctcttgaagccagacccgagacctttcatagcctgg 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 462 caaaagaacaatttgtctgtgttcttcttgaagccagacccgagacctttcatagcctgg 403
Query: 181 ccagaggactcagttatcatagcagcatctgcccagtgctgcccctgccccttctttggg 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ccagaggactcagtcatcatagcagcatctgcccagtgctgcccctgccccttctttggg 343
Query: 241 taccaggtggtccttaatagttgaaggaatgagaccactgtcaaagtctctcacctttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taccaggtggtccttaatagttgaaggaatgagaccactgtcaaagtctctcacctttgg 283
Query: 301 actgcgtctccctgacaagcaggcgtagctttctccagactcacccccgtccttaacagc 360
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 282 actgcttctccctgacaagcaggcgtagctttcaccagactcacccctgtccttaacagc 223
Query: 361 acacccagaaatatggcaaga 381
|||||||||||||||||||||
Sbjct: 222 acacccagaaatatggcaaga 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 784
Length adjustment: 9
Effective length of query: 374
Effective length of database: 775
Effective search space: 289850
Effective search space used: 289850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|