Query= MSMg01no176_m18.b1 MSMg01no176_m18.b1 CHROMAT_FILE:
MSMg01no176_m18.b1 PHD_FILE: MSMg01no176_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:00 2005
(642 letters)
>mm_chr1_139464025_139465064
Length = 1040
Score = 1081 bits (559), Expect = 0.0
Identities = 622/645 (96%), Gaps = 8/645 (1%)
Strand = Plus / Minus
Query: 1 ttttagctatagacgaagtctaagaaaatatatggatgacctacacaatatgaagaaatg 60
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttttagctatagatgaagtccaagaaaatatatggatgacctacacaatatgaagaaatg 781
Query: 61 ttaggataaaaatttacttcagcttctgtacatctccagtacatatttggtgcttgataa 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttaggataaaaatttaattcagcttctgtacatctccagtacatatttggtgcttgataa 721
Query: 121 taaacatgaaacactagcccgtgggtatcataatcacctgttctcagttacctatttttt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 720 taaacatgaaacactagcccatgggtatcataatcacctgttctcagttacctatttttt 661
Query: 181 atgttagtatgctctcctgtcttctttttcatccatccaaacattttcaatttattttat 240
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 660 atgttagtatgctctcctgtcttctttttca--c--ccaaacattttcaatttattttat 605
Query: 241 aaatttgttga--tttttttcctgttatgttttatatatatggacgtaacaaaataagtg 298
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 604 aaatttgttgatttttttttcctgttatgttttatatatatggacataacaaaataagta 545
Query: 299 acagtaataaaataacagtacaaaagaggagatatttcctctctagagcttctgttaatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 acagtaataaaataacagtacaaaagaggagatatttcctctctagagcttctgttaatt 485
Query: 359 gttgtcttttctatttctcctct-cttctccatactaaattaattctcatgtgggcattg 417
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 484 gttgtcttttctatttctcctctac-tctccatactaaattaattctcatgtgggcattg 426
Query: 418 tttaaaataatctcatccattgttaggtcaatatctgtagctggtgtacttactccagaa 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 425 tttaaaataatctcatccattgttaggtcaatatctgtagctggtctacttactcaagaa 366
Query: 478 tttagtccttcctctgcctgtccaaaggcacatagtgtgaagcagagagcagcagcgcta 537
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 365 tttagtccttcctctgcctgtccaaaggcacatattgtgaagcagagagcagcagtgcta 306
Query: 538 gcaatgtaatgcaatcctggcactgagagagggaagtgaacatggggtcccacctctaac 597
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 305 gcaatgtaatgcaatcctggcactgaaagagggaagtgaacatggggttccacccctaac 246
Query: 598 taagaagctaagggaacattttttttccaatagagtgtcactggg 642
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 caagaagctaagggaacaatttttttccaatagagtgtcactggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1040
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1030
Effective search space: 650960
Effective search space used: 650960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_m18.g1 MSMg01no176_m18.g1 CHROMAT_FILE:
MSMg01no176_m18.g1 PHD_FILE: MSMg01no176_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:00 2005
(259 letters)
>mm_chr1_139362645_139363303
Length = 659
Score = 429 bits (222), Expect = e-125
Identities = 248/257 (96%)
Strand = Plus / Plus
Query: 3 ccccctctctcagnatgatgcttaaaaggaagcagatttgataagcatgcccgcagaaac 62
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 203 ccccctctctcagcatgatgcttaaaaggcagcagatttgataagcatgcccgcagaaac 262
Query: 63 attatgttttattgtaaaggcaaagctaccaggagtgaattgttgagaagtgtcttaatc 122
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 263 attatgttttattgtaaaggcaaagctaccaggagtgaagtgttgagaagtggcttaatc 322
Query: 123 aggttccttttttacagctcgaggagctctagggggctggtacagaggcaggacaatatt 182
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 aggtttcttttttacagctcgaggagctctaggtggctggtacagaggcaggacaatatt 382
Query: 183 cagcagatatgccaagtggtgaaggtgaagactccccggcaagactcaacatggggatag 242
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct: 383 cagcagatatgccaagtggtgaaggtgaagactctcgggcaagactcaacatggggagag 442
Query: 243 atcagattggggagggc 259
|||||||||||||||||
Sbjct: 443 atcagattggggagggc 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
