BAC Information

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BAC

Clone NameMSMg01-176N19
Chromosome1 (Build37)
Map Location 91,757,162 - 91,757,767
singlet/doubletsinglet
Overlap geneCentg2
Upstream geneLOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8, Col6a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176N19.T7 (MSMg01no176_n19.b1)MSMg01-176N19.TJ (MSMg01no176_n19.g1)
ACCAG371431AG371432
length1,2021,330
length of high quality
(start - end)		602 (127 - 728)---
definitionCHROMAT_FILE: MSMg01no176_n19.b1 PHD_FILE: MSMg01no176_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:08 2005CHROMAT_FILE: MSMg01no176_n19.g1 PHD_FILE: MSMg01no176_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTACTCTNNNNNCACATTGGGCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCCAGCCAGAGAACAGGCCCCTTGTAACCCCGCCTGGTTTCCTA
GGGTTTCAAAGTCTCCCGTTTAAATACAGATCTGCCAGGCCTCTTCAGTC
CTGGAAATATCTGAGGCTACTTGGCAAGTCTTTGGACTGCAGAGCATGTT
CTCCTCTAGGAAACTTCTCTCCACCTGCAAGATCCACCTTCACATCTCCA
CAGACAACCCCACGCCTTCCCACATCCCCTGCCTGATCCAGGACTCTGAT
ATACAACAATTAGATCTTGGTGCTCACACACACACACACAACACATGTGT
GCTCACTCACAGGCACGCACCCACACCTGCCATCAGGCCTGCCACCAGCT
CTGAGATGTGTTTTGGAATCGATCTCCAGGGAAGTATGCTCGGGAGGGAC
CAGGAGCCTGTGAGCCCAGGCCTAGAGGCTGCAAGCACCTCCGCTCCTCA
CCACGGCCATCCTTGCCCTGCACGGATTATGGACTTCTCACTGAGAGTTC
AGAGCCTGGAAACTAGTTGGAAGGCAGATCACCAACTCCTGAAGCCAGCT
TGACTATGTGGACACATGAACCAGAATGCCCAAGCCACGCCAAGATTTCC
AAAACCAAAATGTGTCTCTATGAATTTTGGTCCCAGTCCACTAGTAACAG
ATGTTTCCAGAAACTGAGAGGGGGAATAAGGTGAAAGGGTTCTTTATAGT
ATGTGCAGCTTCTGTNGTGTTAAGGGGACACCCTAGTGCTGAGCGCACCA
ACCTCTGCATTTCCCAAACAGACCCTTCCTAAGGGATGCTTGTGACCTTC
CAGGGTGATTGTGTGTGTGTGTGTCTCTCATCTCCCCTTTCTTCCCTTTT
ACTTTCTATATTCTATTTCTTTTCTTTTTTCACTTCCTCCTTCTTTCTTC
TTCTTTTTTTCTTCTTATTCCTCCTTCCTCTTACTTTTTCTCCTTCTCTT
CTTCTTCTTTTCCTTTTTTTACTTTTTCTCCTTCATCTCCTCTCTTTTTT
TTCTTCTCATTCCTCTTTTCTTTTTTTTTCCCTCCTTTCCTTTATTTTTT
TTTCTCTTCCTTTTCTCCTCTTTTTTTCTTCTTTTTTCTTTTATCTCCTA
CCTTTTTCTTATCTTCCTCTTTACTTTTATTTCCTCATTCATTTTTCTTT
TC

NNTTCACTAGCGTGCCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAATGAAATTAACAGTTTAATACCGTGTGC
AAGTGTGTGTGTGTGTGTGTGTGCCTGTGTGTGTAGAGAGAGAGAGAATG
TGTGCCTGTGCGTGCTCACNTGCCCGCCCCCCTCCTCCTCCCCCCCTCCT
TCTCCCCCTTCACTCCCCCCTTCTCCCACCTTCTCTTCTTTCCCCTCTCT
CCCCTCCCCCCTTTCTCCCTCCCTCTCTCCCCCCCCCTCTTTCTCTCCCC
TCTCCCCCCTCTTCTTTCTTCCCCTCTTTTTTCCTCCCCTCCCCCTCTCC
CCCCCCCTCCCTTCCTCTTCCCTCCCCCTCCCCCTCCCCCCCCCCTTTTT
TTTTTTTCCCCCCAGCCCCCCCCCCCCCACCCTCTGGCGGGAGAAAAAAA
CTTTTTTTTTTTTTCCCCCCCCCCCAAAAACCCCCCCCCCCCCCCCCCCC
AAAAGGGGGTTTTTTTTTNNNNTTTNNNNTNTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTCTTTTCTCTTTTTTCCCTTTTCTCCCCTCC
CCCCTCCTCTCCCCCTTCCCCCCCCCCTTCCCTCCCCTCTTCCCCCCTCC
CCCCCTCCCTCTCCTCTCTCCCCTTTCTCTTCCCCCCCCTCCCTCTTCTT
TCCTCCCTCCCCCTCTCTCCCCCTCCTCCTCTCCCCCCCTCTCCCTCTCC
TTCTCCCCTCCCCTCCCCCCTCTTTCTCCCCCCTCTCCCTCCTTTTCTCT
CTCCCCCCTCCCTCCTTCCCCCCCTTCTCTCTCTCCCCCCCTCCTCCTCC
TCCCTCCTCCTCCCCCCTTTTTCTCTCCCCCCTCTCTCCTCCTCCTTCCC
CCTCCCCCCCCCTTTCTCCTCCCCCCTCCTCCTCTCCACCCCCCCTCCTC
CTCCCTCCTCCCTCCTCCCCCTCTCCCCCTCCCCCCCTTCCCCCCTCCTC
CCTGCCTCCCCCTCTCTCCCCTCCTCCCTTCTCCTCTCTCTCTACTCCTC
TCTTCCTTCCCTCCTCTCCCCTTCCCCCCTTCTCCCCCTCCCCTCCCTCC
TTCCTCTCCTCCCCTCTCTTTCCTCCCCCTTTCTCTCTCCCCTCCTCCCC
CCCCTCCTTTCCTCCCCCTCTCCTCCCATTCTCTCTCCCTTCTTCCTCTC
CTTCCTTGTCCTCCTCTCCTCCTTCTCTCCCTCTCTCTCCCCTTCCATTT
CCTCTTCCCACTCTCTCTCTCCCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_n19.b1 MSMg01no176_n19.b1 CHROMAT_FILE:
MSMg01no176_n19.b1 PHD_FILE: MSMg01no176_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:08 2005
         (602 letters)



>mm_chr1_91756966_91757967
          Length = 1002

 Score = 1114 bits (576), Expect = 0.0
 Identities = 597/606 (98%), Gaps = 4/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatctgccaggcctcttcagtcctggaaatatctgaggctacttggcaagtctttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cagatctgccaggcctcttcagtcctggaaatatctgaggctacttggcaagtctttgga 256

                                                                       
Query: 61  ctgcagagcatgttctcctctaggaaacttctctccacctgcaagatccaccttcacatc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgcagagcatgtcctcctctaggaaacttctctccacctgcaagatccaccttcacatc 316

                                                                       
Query: 121 tccacagacaaccccacgccttcccacatcccctgcctgatccaggactctgatatacaa 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccacagacaaccccatgccttcccacatcccctgcctgatccaggactctgatatacaa 376

                                                                       
Query: 181 caattagatcttggtgctcac----acacacacacacaacacatgtgtgctcactcacag 236
           |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 377 caattagatcttggtgctcactcacacacacacacacaacacatgtgtgctcactcacag 436

                                                                       
Query: 237 gcacgcacccacacctgccatcaggcctgccaccagctctgagatgtgttttggaatcga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 437 gcacgcacccacacctgccatcaggcctgccaccagctctgagatgtggcttggaatcga 496

                                                                       
Query: 297 tctccagggaagtatgctcgggagggaccaggagcctgtgagcccaggcctagaggctgc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctccagggaagtatgctcgggagggaccaggagcctgtgagcccaggcctagaggctgc 556

                                                                       
Query: 357 aagcacctccgctcctcaccacggccatccttgccctgcacggattatggacttctcact 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagcacctccgctcctcaccacggccatccttgccctgcacggattatggacttctcact 616

                                                                       
Query: 417 gagagttcagagcctggaaactagttggaaggcagatcaccaactcctgaagccagcttg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagagttcagagcctggaaactagttggaaggcagatcaccaactcctgaagccagcttg 676

                                                                       
Query: 477 actatgtggacacatgaaccagaatgcccaagccacgccaagatttccaaaaccaaaatg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 677 actatgtggacacatgaaccagaatgcccaagccacgccaagatttccaaagccaaaatg 736

                                                                       
Query: 537 tgtctctatgaattttggtcccagtccactagtaacagatgtttccagaaactgagaggg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtctctatgaattttggtcccagtccactagtaacagatgtttccagaaactgagaggg 796

                 
Query: 597 ggaata 602
           ||||||
Sbjct: 797 ggaata 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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