BAC Information

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BAC

Clone NameMSMg01-177B04
Chromosome1 (Build37)
Map Location 92,912,124 - 92,955,172
singlet/doubletdoublet
Overlap geneLrrfip1
Upstream geneIqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
Downstream geneGm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177B04.T7 (MSMg01no177_b04.b1)MSMg01-177B04.TJ (MSMg01no177_b04.g1)
ACCAG371571AG371572
length723721
length of high quality
(start - end)
636 (46 - 681)606 (73 - 678)
definitionCHROMAT_FILE: MSMg01no177_b04.b1 PHD_FILE: MSMg01no177_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:33 2005CHROMAT_FILE: MSMg01no177_b04.g1 PHD_FILE: MSMg01no177_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,954,541 - 92,955,172)(92,912,124 - 92,912,729)
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGAGATCCACCTGCTTCTGCCTCCCGAGTGCTGGGACCAAAAG
CATGTGACAGCACGGCCCAGCCGAGTTGCTTCTTTATTACAAAGTGGCCA
TACTTTAGATTTCAGGGAAATAAACCAACCACGGAATGCACACTGGCAAG
GAGAGCGTTTAATTGTTTTTGTGTTGTCTCTGCCTTTATCAGCTGTTCTG
GAATTTGCTCCTGGGGCAAGTGACTACTGCAGTGGTCAGCAATCACCTGG
CAATCCTGAGTTACTTCTTGGGTGTAGTCACACTAATGCTGGGTTTAATC
TGAGAGACAGATGTAAATCCACTTAACTATATAGCTACTATTGCAATAAG
TCCAATAAGCCCATCCTATGAAGGTAAGCGAACTTCTGTAAAACACAAGC
CAGAACTGCTGGCCCCTGGTAAAAGCAGTCAGGTAATAAAGCCCTCCCTT
TCCCACAGCTGATGAACAGGGCTCTGAGCTCTACGGTTAATCCTTTAAAT
TGAGTGGAATTTTGGGAATTCTGGCATCTGAGTAACGGGTCACAAAAGGC
TTCAGTGCTGACTCACTGAGCCTGATTTTTCTGGGATAAGCTGTTCCTCT
CTGAGCATTACCTTTTGAGGAGCCAATGTGGTACCAAGGTCTGACGCGCT
TGGTTCTGCCTGAGAGCAAGTAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCAACAATCCAGGGGAAGGGCCTGT
GACCTCACTAGGGGCTTCGTGGGTGATCAGGTCGCCTTGCACGCTGCCAG
TGTGCTGAGATCCCACACCCTAAAAAGGCATTAATTGTGTTCAGGAAGGC
TCCTGCCTCAGATGGTGGCACTCACCCAGGGGCTGAAGTCATTTGGACCC
TGTATGGAACATTCTCCTGTGTGGCTGCCCTGCTGGGGTGAAGCACTTGA
ATCGCAGGAATTTCAATGTATTAATAGACCCTGCCAGGTGCAATAAATAG
CTGCCTTTGCCCGACCTTCACCTCTCATGGCACTGAGCTTTGAGAGGCCC
TGCACACCCCTGGAGTAACAGAACGCATATGAGGGAGGGGTCTCCCTGTG
AGAGACAGGCAGTGGTGGGCTGTGCCCCACAGATGAAAACAAAAAAAATG
AACAAAAGGTTGAAGATGTGTCTCAGGAAAGCAGAAAATCAGCTAGGCTA
GTCCACCCTCCCACCCCTCAACCCTCATGCTCCCACCCCACACCCACACC
CCACTCCCCACCCTCCCACCCCACTCCACCCCACACCCTCACACCTTACC
ACTCACCCTCCCAACCCCACCCTCCACCGCACCCCCATTCTCCCACCTCA
ACCCCACCCCCATACCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_b04.b1 MSMg01no177_b04.b1 CHROMAT_FILE:
MSMg01no177_b04.b1 PHD_FILE: MSMg01no177_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:33 2005
         (636 letters)



>mm_chr1_92954264_92955299
          Length = 1036

 Score = 1152 bits (596), Expect = 0.0
 Identities = 623/632 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggagatccacctgcttctgcctcccgagtgctgggaccaaaagcatgtgaca 64
           |||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 909 gaattcctagagatccacctgcgtctgcctcccgagtgctgggatcaaaagcatgtgaca 850

                                                                       
Query: 65  gcacggcccagccgagttgcttctttattacaaagtggccatactttagatttcagggaa 124
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 849 gcacggcccagctgagttgcttctttattacaaagtagccatactttagatttcagggaa 790

                                                                       
Query: 125 ataaaccaaccacggaatgcacactggcaaggagagcgtttaattgtttttgtgttgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ataaaccaaccacggaatgcacactggcaaggagagcgtttaattgtttttgtgttgtct 730

                                                                       
Query: 185 ctgcctttatcagctgttctggaatttgctcctggggcaagtgactactgcagtggtcag 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ctgcctttatctgctgttctggaatttgctcctggggcaagtgactactgcagtggtcag 670

                                                                       
Query: 245 caatcacctggcaatcctgagttacttcttgggtgtagtcacactaatgctgggtttaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 caatcacctggcaatcctgagttacttcttgggtgtagtcacactaatgctgggtttaat 610

                                                                       
Query: 305 ctgagagacagatgtaaatccacttaactatatagctactattgcaataagtccaataag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 609 ctgagagacagatgtaaatccacttaactatatagctactattgcaataagtccaataaa 550

                                                                       
Query: 365 cccatcctatgaaggtaagcgaacttctgtaaaacacaagccagaactgctggcccctgg 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 549 cccatcctatgaaggtaagcgaacttctgtaaaacacaagccggaactgctggcccctgg 490

                                                                       
Query: 425 taaaagcagtcaggtaataaagccctccctttcccacagctgatgaacagggctctgagc 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 489 taaaagcagtcaggtaataaagccctccctttcccacagctgatgagcagggctctgagc 430

                                                                       
Query: 485 tctacggttaatcctttaaattgagtggaattttgggaattctggcatctgagtaacggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctacggttaatcctttaaattgagtggaattttgggaattctggcatctgagtaacggg 370

                                                                       
Query: 545 tcacaaaaggcttcagtgctgactcactgagcctgatttttctgggataagctgttcctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcacaaaaggcttcagtgctgactcactgagcctgatttttctgggataagctgttcctc 310

                                           
Query: 605 tctgagcattaccttttgaggagccaatgtgg 636
           ||||||||||||||||||||||||||||||||
Sbjct: 309 tctgagcattaccttttgaggagccaatgtgg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no177_b04.g1 MSMg01no177_b04.g1 CHROMAT_FILE:
MSMg01no177_b04.g1 PHD_FILE: MSMg01no177_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:33 2005
         (606 letters)



>mm_chr1_92911924_92912929
          Length = 1006

 Score = 1156 bits (598), Expect = 0.0
 Identities = 604/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccaacaatccaggggaagggcctgtgacctcactaggggcttcgtgggtgatcaggt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccaacaatccaggggaggggcctgtgacctcactaggggcttcgtgggtgatcaggt 260

                                                                       
Query: 61  cgccttgcacgctgccagtgtgctgagatcccacaccctaaaaaggcattaattgtgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgccttgcacgctgccagtgtgctgagatcccacaccctaaaaaggcattaattgtgttc 320

                                                                       
Query: 121 aggaaggctcctgcctcagatggtggcactcacccaggggctgaagtcatttggaccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaggctcctgcctcagatggtggcactcacccaggggctgaagtcatttggaccctg 380

                                                                       
Query: 181 tatggaacattctcctgtgtggctgccctgctggggtgaagcacttgaatcgcaggaatt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tatggaacattctcctgtgtggctgccctgctggggcgaagcacttgaatcgcaggaatt 440

                                                                       
Query: 241 tcaatgtattaatagaccctgccaggtgcaataaatagctgcctttgcccgaccttcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatgtattaatagaccctgccaggtgcaataaatagctgcctttgcccgaccttcacc 500

                                                                       
Query: 301 tctcatggcactgagctttgagaggccctgcacacccctggagtaacagaacgcatatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcatggcactgagctttgagaggccctgcacacccctggagtaacagaacgcatatga 560

                                                                       
Query: 361 gggaggggtctccctgtgagagacaggcagtggtgggctgtgccccacagatgaaaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaggggtctccctgtgagagacaggcagtggtgggctgtgccccacagatgaaaacaa 620

                                                                       
Query: 421 aaaaaatgaacaaaaggttgaagatgtgtctcaggaaagcagaaaatcagctaggctagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaatgaacaaaaggttgaagatgtgtctcaggaaagcagaaaatcagctaggctagt 680

                                                                       
Query: 481 ccaccctcccacccctcaaccctcatgctcccaccccacacccacaccccactccccacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaccctcccacccctcaaccctcatgctcccaccccacacccacaccccactccccacc 740

                                                                       
Query: 541 ctcccaccccactccaccccacaccctcacaccttaccactcaccctcccaaccccaccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcccaccccactccaccccacaccctcacaccttaccactcaccctcccaaccccaccc 800

                 
Query: 601 tccacc 606
           ||||||
Sbjct: 801 tccacc 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)