BAC Information

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BAC

Clone NameMSMg01-177B21
Chromosome1 (Build37)
Map Location 101,607,644 - 101,607,881
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177B21.T7 (MSMg01no177_b21.b1)MSMg01-177B21.TJ (MSMg01no177_b21.g1)
ACCAG371603AG371604
length862703
length of high quality
(start - end)
239 (107 - 345)112 (428 - 539)
definitionCHROMAT_FILE: MSMg01no177_b21.b1 PHD_FILE: MSMg01no177_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:37 2005CHROMAT_FILE: MSMg01no177_b21.g1 PHD_FILE: MSMg01no177_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTGAACGATTAAAAAATAGGGGGAAAAAAAAAGGGGGTGGAAATGAGGA
AAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGCCTTCCAGGTAGTATCATAATATTTGGATTCATAATA
ATGTTTCTTACAGGTAACCCAGTCATGCACATAGGGTCTTTCTTCTTTAC
TTGTCAGAATCCTTCTTTCCATTATCATTAGAAACAGCTTTGAGTCAGTA
TGCAGTTCCACTGGTGCATGAAATGAGTTATGAGTGACACACACCTTAAA
GGGAGCTAGTTCAAACATTTTCATTGCTTTATAATTTACTGACAGAGTTA
GCGTCTGTAGGAGGGGAAACAGGAGGGTAAACCGGACCAAACCAGGGGAA
CAAGTGAGCAGACAAACAAAAAGGAGAAAAATAAGAAAAAACAGACAAAG
AAAGAAAAAAAAGGTGAAGAAACTTACACGCACAAGATACTATAAAAAGG
GAGGACAAAAAAGAAAGGGGGCAAAAAAATCGGGATGAGAATATCATAAG
GGCAATGAAGGAAGAAAAGAAAAAAGAAAGAAAAAAGGGGATTCACTAAA
AAGGGGGGAAAATAAGGGAAGAAAAAGAGAGAGAGAAAAAGGGGGAGAAA
AAAAAAAAAAAAAAGAGAGAAGCAACAAAATGAAAATAAAAACAATTAAA
GAAAAACAAAAAACGGATGGAATAAATAAAATTATTGAAAATAGAGATGG
GGAAAAAAAGTTGAAGTAAAAAAAAGAGGAAAAAAGAAAAAAGTGGGAAA
AAAAAAAAGGTGGAAAAAAAGTGAAAAAAGAGACAAAAAGGCGAAAAAAA
GGAACAAAAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTGTTCCAAATGCATATTGATTATCACAGAATATTGATATTT
GACCTATTGCATACCATCATTTTAAATAAAATTGATACTCATCCTATGAA
TAAATTAATTGCTTATGCATGCTTTTGTATCTTCTATAAATTCATGCATG
CATGCATCCCATTTACTGTATTTAAAAACAACCCTTCTATGGTAGAAAAG
TATATGTGAATTGGATCACATGATAATTCTTTTGAGTTTCCACCTGCTTC
CGCACAGATAATTAAATTACGTGTTGTATATGGGGTTTTAAAATGTTGAA
AATTGCCTGGAAAAGACCTCTTAAAGCAATGCCTCGCTAGATTCACATCC
CAGGTAATTTATACAAAAATAATTGGCCATATAATCTCATTCTTTACATC
ATCAAAATAGTAATGCCTTGAGATAATAATTTGGTATTTAAAATAAATAA
ATAAATGTGCATGTCATATTGTAAAGATTTGCTCTCAGTGTCATCAGATT
CTACCTGTTCCACACATTGGTGTTAATTCTCGAGGACTTATACTTAATCA
ATTATTGCAAAATGATACTCATTTTTTACTTCATAAAAATACAATATGCG
CATGTCACTATTGATACCTTTTTAGTCTTTCTAAAAACCATTGCTTTAAC
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_b21.b1 MSMg01no177_b21.b1 CHROMAT_FILE:
MSMg01no177_b21.b1 PHD_FILE: MSMg01no177_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:37 2005
         (239 letters)



>mm_chr1_101607444_101608081
          Length = 638

 Score =  416 bits (215), Expect = e-121
 Identities = 233/239 (97%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccttgccttccaggtagtatcataatatttggattcataataatgtttcttacaggta 60
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttccttgccttaaaggtagtatcataatatttggattcataataatgtttcttacaggta 379

                                                                       
Query: 61  acccagtcatgcacatagggtctttcttctttacttgtcagaatccttctttccattatc 120
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 378 acccagtcatgcacataggttctttcttctttacttgtcaaaatccttctttccattatc 319

                                                                       
Query: 121 attagaaacagctttgagtcagtatgcagttccactggtgcatgaaatgagttatgagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attagaaacagctttgagtcagtatgcagttccactggtgcatgaaatgagttatgagtg 259

                                                                      
Query: 181 acacacaccttaaagggagctagttcaaacattttcattgctttataatttactgacag 239
           |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 258 acacacaccttaaagggagctatttcaaacattttcat-gctttataatttactgacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)