BAC Information

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BAC

Clone NameMSMg01-177D02
Chromosome1 (Build37)
Map Location 96,500,767 - 96,501,056
singlet/doubletsinglet
Overlap genenone
Upstream geneFarp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177D02.T7 (MSMg01no177_d02.b1)MSMg01-177D02.TJ (MSMg01no177_d02.g1)
ACCAG371652AG371653
length729728
length of high quality
(start - end)
659 (47 - 705)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no177_d02.b1 PHD_FILE: MSMg01no177_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:43 2005CHROMAT_FILE: MSMg01no177_d02.g1 PHD_FILE: MSMg01no177_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAACACATTTTTTTTTATAGACCTGGAAAGAACAATTCTCAACT
TCATATGGAAGGAAAATCTGGAGAGCCAAAAGAATCCTGAACAGTAAAAG
AACTTTGAGAGGAATCACCATCTCTGACCTCAAGCTGTACTACAGAGCAA
TAGTGATATAAATGGCCTGGTATTGGTACAGAAACAAACTGGTCGATCAA
CAGAATTGAGTCAAAGACCCAGAATTATGATGTTATTTAACCCCAGAATT
CCTCTACATTTTTTTTTTTGTCTGTAGAGCCACTCTGTTATCTAGAGAGC
TGTTCTCACTGTGTGAAGATCAGCTATAATTTTATTTGTGGAAGTGTTTC
TTTTATGAATGTGGGTGCTCTCTTTTGGTGCCTAGATGCTTAGAATTGTA
ATATCATCGTGGCGAGTGTGTTTTGCCTTTCTCTATCTCCTCTGATTAGT
TTTGTTTGAAATATGTTTTGGTAGATATTACAGTGGCTATATCTGGTTGC
TTCTTGGGTCCATTTGCTTGGAGTATCTTTTCCCAGCTTTTACTCTGAGG
TAGTGGCTCTCTTTGATGGTAAGGTGTGCTTTTTGGATACAACAGAAGAA
TGGATCCTGTTTTCTAATCCAATCTGTTAATTTTTGTCTTTTTATTGGGG
GAATTAAGACCATTCTTGTTAAGAGTTAN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTGTCTATGCTCTCATCTCCCTGG
ATCTTAAACTGCTATTAACCATCCCTTCTTCATATCATCTATATTCTACT
GTTCCTCCCCAATTGAGATCTTTCTTCCTCATACATTCATGGCCCCTTTC
TAGTTTAATGGATTCTATGTTTCAGGTTAAAAGCACAAGTATAAGGGTTT
GAAGTCTTCCTGTGTGTAGGATGGCTCCTTTGGAATTTTTTTTCACTTTC
ATCCATTTACTTGAAATTTTCATAATTTATTTTATTCTTTACATCTGAAT
ATAGTCACCTTGTGTAGATGTATACCATTCTTATTATTGAGTGTTTTTAG
GCTGACTTCATTTCCTAGCTACTATGAATTGAGTAGCAAAAACAAGAATA
GGCAAATTTCTCTGCACTAAGACATTGAATCCTCCAGGTATATGAATGGT
TTAACTTCATCAAATGGTAGTTATATTTCTAACCTATGAGTAACCTTCAA
ATGGCTTTGAAAGTGACTTCACAAGCCTTTATTCCCACCAACAATGAATA
AAAGTTCCACTTTTCCTAAATGGGTATCTATATCACACAAACCCCAAAGC
TCAGGGAACATCACGAAAAGGAAGACCAAACATTTGTGAGAACCAAAGAT
CTGGACGGTCTGCTGAGATTCAGAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_d02.g1 MSMg01no177_d02.g1 CHROMAT_FILE:
MSMg01no177_d02.g1 PHD_FILE: MSMg01no177_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:43 2005
         (293 letters)



>mm_chr1_96500678_96501370
          Length = 693

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgtctatgctctcatctccctggatcttaaactgctattaaccatcccttcttcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctctgtctatgctctcatctccctggatcttaaactgctattaaccatcccttcttcata 320

                                                                       
Query: 61  tcatctatattctactgttcctccccaattgagatctttcttcctcatacattcatggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcatctatattctactgttcctccccaattgagatctttcttcctcatacattcatggcc 260

                                                                       
Query: 121 cctttctagtttaatggattctatgtttcaggttaaaagcacaagtataagggtttgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctttctagtttaatggattctatgtttcaggttaaaagcacaagtataagggtttgaag 200

                                                                       
Query: 181 tcttcctgtgtgtaggatggctcctttggaattttttttcactttcatccatttacttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tcttcctgtgtgtaggatggctcctttggaattttttttcactttcatccatttacttga 140

                                                             
Query: 241 aattttcataatttattttattctttacatctgaatatagtcaccttgtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aattttcataatttattttattctttacatctgaatatagtcaccttgtg 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)