BAC Information

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BAC

Clone NameMSMg01-177D09
Chromosome1 (Build37)
Map Location 90,147,794 - 90,148,381
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177D09.T7 (MSMg01no177_d09.b1)MSMg01-177D09.TJ (MSMg01no177_d09.g1)
ACCAG371664AG371665
length736740
length of high quality
(start - end)
603 (45 - 647)638 (77 - 714)
definitionCHROMAT_FILE: MSMg01no177_d09.b1 PHD_FILE: MSMg01no177_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:44 2005CHROMAT_FILE: MSMg01no177_d09.g1 PHD_FILE: MSMg01no177_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCTTGCTCCGATCCTAGGTGGTTTGCCCAGAGTTTAACTTCGAC
GAGGTTGTCTCTCTCATCCAGAAGCTCTGTGAGAACATTGGGGCCATGGA
CCTGCAGCATGACAGGGCTGCTGTTACCTGGATGGGCATCTTCCTCCAGA
TGCGGGTCAAGGAGCTGGAGGACAAGGTAACCAAGCTCAGCAGGGGATGC
TTGGATTGGTACTGGGACTGACCTGTGTAGCACACACATGGAGAATGACC
ACTTCCACCCAAACTAGGAGTGCTAAATGGGATAAAACAGAGTTCTAGAA
TGAGAAAGCTGTTGAGATGTAACTAGTCAGTGAGTAGATGAGGGACTACT
GGTGCCAGGCTCTTTTCACCGAAGCACAGTGAAGACACACTGAACATGTA
GGAGGAAAAGACCCATAGGGCTTCCAGAGAGGGCTTTTGGGAGTGGGGTG
TCTAACCAACACACCATGTTTCCCAAGATAGGAGTATCCTTCAGGGGCCC
AGAAATACCTTTATTTCTGTCTCTGTCATAAAGTACACTGACCAAACACA
ATTTAGCAAAGTCAATGGCCAAACAGGTTATAGCTCATCACTGAGGGACA
TTAAGTACCTAGTGAAATTATATCCACAGTTAAGAGCAGTGTGGTGGTGC
ATACCTTCTATCCCAGCACTCAGGAGGCCAAGTTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGTCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATCCCACCTCACACCAGTCAGAATGGCTAAGT
TGAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTACATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTTGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCCGAAAATC
CCGCAATACCTCTCCTGGGCATATATCCAGAAGAGGACCCAACCGGTAAG
AACAACACATGCTGCACTAAGTTCATAGCAGCCTTACTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCGACAGAGGAATGGATACAGAAAT
TGTGGTATATTTACACAATGGAGTACTAGTCAGCTATTAAAAAAATGAAA
GTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATAACAAAGGAACTCACACAATATGTACTTACTGATAAG
TGGATATTAGCCCAGAAACTTAGGATACCCAAGATATACAATTTGCTAAA
CATATGAAACTCAAGAAGAATGAAGACCATAGTGTGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_d09.b1 MSMg01no177_d09.b1 CHROMAT_FILE:
MSMg01no177_d09.b1 PHD_FILE: MSMg01no177_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:44 2005
         (603 letters)



>mm_chr1_90147591_90148586
          Length = 996

 Score =  977 bits (505), Expect = 0.0
 Identities = 570/595 (95%), Gaps = 7/595 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtcttgctccgatcctaggtggtttgcccagagtttaacttcgacgaggttg 63
           |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattctgttttgctctgatcctaggtggtttgcccagagtttaactgcgacgaggttg 263

                                                                       
Query: 64  tctctctcatccagaagctctgtgagaacattggggccatggacctgcagcatgacaggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctctctcatccagaagctctgtgagaacattggggccatggacctgcagcatgacaggg 323

                                                                       
Query: 124 ctgctgttacctggatgggcatcttcctccagatgcgggtcaaggagctggaggacaagg 183
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgctgtcacctggataggcatcttcctccagatgcgggtcaaggagctggaggacaagg 383

                                                                       
Query: 184 taaccaagctcagcaggggatgcttggattggtactgggactgacctgtgtagcacacac 243
           |||||||||||||||||||||||     ||||||||||||||||||||||||||||||||
Sbjct: 384 taaccaagctcagcaggggatgc-----ttggtactgggactgacctgtgtagcacacac 438

                                                                       
Query: 244 atggagaatgaccacttccacccaaactaggagtgctaaatgggataaaacagagttcta 303
             ||||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct: 439 --ggagactgaccacttccatccaaaccaggagtgctaaaggggataaaacagagttcta 496

                                                                       
Query: 304 gaatgagaaagctgttgagatgtaactagtcagtgagtagatgagggactactggtgcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 497 gaatgagaaagctgttgagatgtaactagtcagtgagtagatgagggaccactggtgcca 556

                                                                       
Query: 364 ggctcttttcaccgaagcacagtgaagacacactgaacatgtaggaggaaaagacccata 423
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggctcttttcagtgaagcacagtgaagacacactgaacatgtaggaggaaaagacccata 616

                                                                       
Query: 424 gggcttccagagagggcttttgggagtggggtgtctaaccaacacaccatgtttcccaag 483
           ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 617 gggcttctagagagggcttttgggagtcgggtgtctaacctacacaccatgtttcccaag 676

                                                                       
Query: 484 ataggagtatccttcaggggcccagaaatacctttatttctgtctctgtcataaagtaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 677 ataggagtatccttcaggggcccagaaatacctttatttctgtctctgtcataaactaca 736

                                                                  
Query: 544 ctgaccaaacacaatttagcaaagtcaatggccaaacaggttatagctcatcact 598
           ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 737 ctgaccaaacacaatttagcaaagtcaatggtcaaacaggttatagctcaccact 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 996
Length adjustment: 10
Effective length of query: 593
Effective length of database: 986
Effective search space:   584698
Effective search space used:   584698
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)