TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGATCAGCATGGGACACATGCTAAAGCAGGTACATGCTAAGCAG
TGGGATGACATAATGAATCAAATCCAGCATGTTCTCATGAAACATGTAAT
GAGCCAGTGTAATGTGGAAGATGGTTATTCATCATACAAATACAGAAACT
GTAAAAAATGTATATTTGTAATAAATATAAAAAGAAAAAAAAAGGAGCTC
CATGCTTCTATGGAGGCTTATTAGAGAAAAACTAAGCCAGACAGGCTTGC
AGAAAAGGATGCCCTGAGGAGACAACTATTTAAGACTAAAGGCAACAAGG
TAAAAACAGTAGCCTATGTTTTTAGTCCGGTCCTGGGCAGGCAGGTGGCA
ACAGTCAGAAACTAAAGGAAGCCAGCATGGCTGAAGCACAAGGCCTGCAT
GTGGTTTTCATATGTGCACTAGAGATCCCTCCAAGTACATGTGAAGACCA
CATGAAGGTCTCGGAGGACAGACAGGGTCCAAGGTCAGGGAACTAAAGTG
GAGGTGGAAAACAGCTGTGAGTGCTCCATAGAAGACAAGGTGCAGATTTT
AGACTAGACATATGACTCAGCTGGCACAGCACTTGCTGAGCACCACAAAC
CCCTGAGGTCAATCCCTCACAGAACATAAAACCAGACATGGTGATTCATG
TCTGTAATCCCAGAACTAGTGAATCTCAGACTGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGCCACAACATGTGG
GGAATTGCAGGCTGGTCTCCAGTCGAGCTGAGTCTGAACCCCAGTGGTGA
TAATTCACCTTCATGACATGGTAGGTGTTTCCTCATGCTCCTGAAACTCT
GGCTCCTGTCTAAGTTACCGCCCTCCACAATCCCCACAAGAGAAGCATGG
TCAGTAGTCATGTAGACAATGGCCCAAGTTTCTGACCTTCAGGCTAAACT
CCTCCCCAGTTACCTAGCAACCATAAAGACCATAGAAGAGGCTGTTAGGC
CCCCACCTCGCCCTCTCACACCTTTGTTCCCTTACCTCTCACTTCTCTCT
CCTCTTTCCTTTCTCTTTGTCTTCTTCTCTCCCCTCTCCTCTTCTCCTCT
CCTCTCTCCCTCTTTCTCTCTCCTTTCTCTTTCCCTCTAGCCTTCTCTCT
CTCTCTCTCTCTTCTCTCTTTCTCCCTGCATTTCTATAATAAAGCTCTTA
AACCATAGAGAGTCTCCACTCCATCAAGAAACGGTATGCACTCTGGTCAT
GTAGGGAACCTCTTCCCTTATCCCACTTTCCCATAACCTTGGGGCTACAG
GGTGTGGCCCCGGGGCCCCCAGGTCGGGGGCTGGCCCTTCTCCACCCCCT
GCGGAGTGGGCCAGAGGATTGTATGTC

Query= MSMg01no177_f10.b1 MSMg01no177_f10.b1 CHROMAT_FILE:
MSMg01no177_f10.b1 PHD_FILE: MSMg01no177_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:54 2005
         (685 letters)



>mm_chr1_107327837_107328921
          Length = 1085

 Score = 1234 bits (638), Expect = 0.0
 Identities = 671/682 (98%), Gaps = 1/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggatcagcatgggacacatgctaaagcaggtacatgctaagcagtgggatgac 64
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagaatcagcgtgggacacatgctaaagcaggtacatgctaagcagtgggatgac 263

                                                                       
Query: 65  ataatgaatcaaatccagcatgttctcatgaaacatgtaatgagccagtgtaatgtggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataatgaatcaaatccagcatgttctcatgaaacatgtaatgagccagtgtaatgtggaa 323

                                                                       
Query: 125 gatggttattcatcatacaaatacagaaactg-taaaaaatgtatatttgtaataaatat 183
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 324 gatggttattcatcatacaaatacagaaactgataaataatgtatatttgtaataaatat 383

                                                                       
Query: 184 aaaaagaaaaaaaaaggagctccatgcttctatggaggcttattagagaaaaactaagcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaagaaaaaaaaaggagctccatgcttctatggaggcttattagagaaaaactaagcc 443

                                                                       
Query: 244 agacaggcttgcagaaaaggatgccctgaggagacaactatttaagactaaaggcaacaa 303
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 agacaggcttgccgaaaaggatgccctgaggagacaactattgaagactaaaggcaacaa 503

                                                                       
Query: 304 ggtaaaaacagtagcctatgtttttagtccggtcctgggcaggcaggtggcaacagtcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtaaaaacagtagcctatgtttttagtccggtcctgggcaggcaggtggcaacagtcag 563

                                                                       
Query: 364 aaactaaaggaagccagcatggctgaagcacaaggcctgcatgtggttttcatatgtgca 423
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaactaaaggaagccagcatggctgaagcacaaggcctgcatgtggttttcatatgtgca 623

                                                                       
Query: 424 ctagagatccctccaagtacatgtgaagaccacatgaaggtctcggaggacagacagggt 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 ctagagatccctccaagtacatgtgaagaccacatgaaggtcttggaggacagacagggt 683

                                                                       
Query: 484 ccaaggtcagggaactaaagtggaggtggaaaacagctgtgagtgctccatagaagacaa 543
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 ccaaggtcagggaactaaagtggaggtggaaaacagctgtgagtgttccatagaagacaa 743

                                                                       
Query: 544 ggtgcagattttagactagacatatgactcagctggcacagcacttgctgagcaccacaa 603
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 744 ggtgcagattttagactagacatatgactcagctggcacagcgcttactgagcaccacaa 803

                                                                       
Query: 604 acccctgaggtcaatccctcacagaacataaaaccagacatggtgattcatgtctgtaat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acccctgaggtcaatccctcacagaacataaaaccagacatggtgattcatgtctgtaat 863

                                 
Query: 664 cccagaactagtgaatctcaga 685
           ||||||||||||||||||||||
Sbjct: 864 cccagaactagtgaatctcaga 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)