BAC Information

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BAC

Clone NameMSMg01-177F12
Chromosome1 (Build37)
Map Location 169,441,902 - 169,442,187
singlet/doubletsinglet
Overlap genenone
Upstream geneEG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52
Downstream geneRxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177F12.T7 (MSMg01no177_f12.b1)MSMg01-177F12.TJ (MSMg01no177_f12.g1)
ACCAG371760AG371761
length722721
length of high quality
(start - end)
---289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no177_f12.b1 PHD_FILE: MSMg01no177_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:54 2005CHROMAT_FILE: MSMg01no177_f12.g1 PHD_FILE: MSMg01no177_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCCTTATCTAATGTCAGCCTCCCAATGCTGAATGGAAAGGAGGA
ACAACCTTCTATTGCATAACCATAGTTTTCCATGCTCAAAAAAAAAAAAA
AAATGAACCGTTACAACTGAAGGTCAGCGCTTACCCACTCAAAGTGTTTA
GCAGGAGCGTAAAGGATGCTGTGGTTAATCTCTGACTGCCCCTGCTCCTC
TTTCTCCCCACTCAAGTGCCTCCAAAGTAACTGTGAAAATGAATGCGAAG
ATAACATACATCCCCACATCTCGTGCAAGCCTCGCGTGCTTTGTTAACAG
ACTCCTGGATGATTGGGAACCTATGGCAGGCTTTGCCTGACTGAACTCTG
CTCTATGACAGATGAAACCGAACAACAGTGATTTACTAGCGGATGGATGG
AAATCACTACTCTCTGCATAGGAAATCCTAAATGGAAATAAAACTTCTCT
AGAGATATTCCCCTAGGGCCCGGATGCCTTGTTGAATTATGCTCATATCT
ATAGGTGCTTCTCCATACAAGGCATGATGTATAACACTCTCAAAGATGCA
GAATGACCTGTCTTCAAGGATACTGAGCAACCCCTGCCCCCAAACTTATT
ATCGAGCATATGTTGCAATAAAGCATCCTATGATAAGATCAGACTCCTTT
AGTAAGGACAGCTGACATACAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCGTTCTGCCTGTTAACAATCCAG
CAGCCTTATTAGGCGGCGTCCGCTGGTCCCTGTGCTTCTCTCACAGGTCA
CTGTTGATCCCTGAGTCTGCTTTTAGTGGAGGCGCTGGGGATTGAACCCA
GGGCTTCCTAAATGCCAGGTAAGCCACAGTTCAGCCTCTCCAGCCTGAAA
AAGCTCTAATAAATAGTGATGAAATTAAACGGGTGGCTTTGTAGAGGCCC
AGGCAAAGCATCGGTGGAGAAAAAGGAAATAAAGTAGATTCTCATCTGGA
CAGCTGAGTGAAGATACTTAGTTCTTTCAGTAGTTCAGCCACTTGGTCCT
CAGGGGTAGATGGAGAGCGCGTGCTCCATCTTGCCGATTGCCACACTGGA
TCTCAAGCCTTTAGCTCTACCTCCGTCTCTAGAGTCAGGCAAATTATTCA
GCCTAGTTTGTATCTTATTTCCTTCCCTACAAACAAGGAATGTTTATAAA
TATAAGAATTGGACCTAGTCCATGGGGCTTTCTTTTTTCTCCTGATCCAG
TGTGTACGTGCGGTCTCTCCTTGGTAGATAATGGTTTGTTGAAATAATTA
AGTGCTTCCTCTCACTTAAGCGCTTCTGTGATTTCTTCTCCATTTGATTC
ACCTGTTACCTTTGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_f12.g1 MSMg01no177_f12.g1 CHROMAT_FILE:
MSMg01no177_f12.g1 PHD_FILE: MSMg01no177_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:54 2005
         (289 letters)



>mm_chr1_169441699_169442387
          Length = 689

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gttctgcctgttaacaatccagcagccttattaggcggcgtccgctggtccctgtgcttc 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 204 gttctgcctgttaacaatccagcagccttattaggtggcgtccgctggttcctgtgcttc 263

                                                                       
Query: 64  tctcacaggtcactgttgatccctgagtctgcttttagtggaggcgctggggattgaacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcacaggtcactgttgatccctgagtctgcttttagtggaggcgctggggattgaacc 323

                                                                       
Query: 124 cagggcttcctaaatgccaggtaagccacagttcagcctctccagcctgaaaaagctcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagggcttcctaaatgccaggtaagccacagttcagcctctccagcctgaaaaagctcta 383

                                                                       
Query: 184 ataaatagtgatgaaattaaacgggtggctttgtagaggcccaggcaaagcatcggtgga 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 384 ataaatagtgatgaaattaaacgggtggcttcgtagaggcccaggcaaagcatcggtaga 443

                                                         
Query: 244 gaaaaaggaaataaagtagattctcatctggacagctgagtgaaga 289
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 gaaaaaggaaataaagtagattctcatctggatagctgagtgaaga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)