Query= MSMg01no177_g06.b1 MSMg01no177_g06.b1 CHROMAT_FILE:
MSMg01no177_g06.b1 PHD_FILE: MSMg01no177_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:57 2005
(511 letters)
>mm_chr1_14878907_14879817
Length = 911
Score = 828 bits (428), Expect = 0.0
Identities = 488/508 (96%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 5 gaattctttattaccctaatactttaaatttatgtcttctacagattgagtataatttca 64
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 711 gaattctttattagactaatactttaaatttatgtcttccacagattgagtataatttca 652
Query: 65 agtatctccaatgcccattatccatgaccaaaaaagtagcacctacccaggatgtgatat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 651 agtatctccaatgcccattatccatgaccaaaaaagtagcacctacccaggatgtggtat 592
Query: 125 atgagcctcttacaatcctcaatgtaagtttgcattgacagatgtgtttccagtcgagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgagcctcttacaatcctcaatgtaagtttgcattgacagatgtgtttccagtcgagct 532
Query: 185 ctgaattgctttgacataacatgcttgatggaaatggaagtgttctggggagacattttt 244
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctgaattgcttggatataacatgcttgatggaaatggaagtgttctggggagacattttt 472
Query: 245 atagctcaatttccatatctgccatgttgtccaagcctgtatttttcactttagattttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atagctcaatttccatatctgccatgttgtccaagcctgtatttttcactttagattttc 412
Query: 305 tagaattcatcttctctggagaatagtctttctaggttagcatgttcatctggtatgcag 364
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 411 tagaattcatcttctctggagaatagtctttctaggttaacatattcatctggtatgcag 352
Query: 365 cagcctcctcactggggtctccgttgcttaccaaggcagtttggtctctgcattatggta 424
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct: 351 tagcctcctcactagggtctccattgcttaccaagacagtttggtctctgcattatgata 292
Query: 425 gcggtgatttttgtgaatacaaa-atgatgtggggaactcttctgtcccctcaatcccag 483
|| ||||||||||||||| ||| | |||||||||||||||||||||||||| ||| |||
Sbjct: 291 gccgtgatttttgtgaatg-aaagaggatgtggggaactcttctgtcccctctatctcag 233
Query: 484 taatttctcattacatatttctgtgata 511
||||||||||||||||||||||||||||
Sbjct: 232 taatttctcattacatatttctgtgata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_g06.g1 MSMg01no177_g06.g1 CHROMAT_FILE:
MSMg01no177_g06.g1 PHD_FILE: MSMg01no177_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:57 2005
(286 letters)
>mm_chr1_14738237_14738920
Length = 684
Score = 456 bits (236), Expect = e-133
Identities = 265/278 (95%), Gaps = 10/278 (3%)
Strand = Plus / Plus
Query: 1 aaaggacatgatcgcaatagtgttcatgtgagtcagtgggttgaaagtctgtgtgc---t 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aaaggacatgatcgcaatagtgttcatgtgagtcagtgggttgaaagtctgtgtgcttgt 260
Query: 58 ttgaaagtcagggcaccctgagaataaaattatgagaaaataacccattttaaatattga 117
|| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tt----gt-ggggcaccctgagaataaaattacgagaaaataacccattttaaatattga 315
Query: 118 tctttgaaagtctgctccatttctttatttatccaaattcttactattgtcagtattcaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tctttgaaagtctgctccatttctttatttatccaaattcttactattgtcagtattcaa 375
Query: 178 tgtaacttcttttgtgggtctgtttgctcttttgagacacttgttacaagagcaatccca 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 376 tgtaacttcttttgtgggtctgtttgctcctttgagacacttgttacaagagcaatccca 435
Query: 238 ccactgaacccactcactcccctgtgaagtttt-gttc 274
||||||||||||||||||||||||||| ||||| ||||
Sbjct: 436 ccactgaacccactcactcccctgtga-gtttttgttc 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
