Query= MSMg01no177_h03.b1 MSMg01no177_h03.b1 CHROMAT_FILE:
MSMg01no177_h03.b1 PHD_FILE: MSMg01no177_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:01 2005
(656 letters)
>mm_chr1_178960987_178962040
Length = 1054
Score = 1208 bits (625), Expect = 0.0
Identities = 646/655 (98%), Gaps = 6/655 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttgatct--cctcaaatatcacctcaaaattgtaccctatcctccttcatca 61
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgagctttcc--aaatatcacctcaaaattgtaccctatcctccttcatca 261
Query: 62 aaacctacttatgtatgacatctcttggagtatgaggcatgtattagtgcatatgaaatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaacctacttatgtatgacatctcttggagtatgaggcatgtattagtgcatatgaaatg 321
Query: 122 acatgagatggtgtgtgaacacacagcctagtgcattcttaatggaaagtatatacatga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatgagatggtgtgtgaacacacagcctagtgcattcttaatggaaagtatatacatga 381
Query: 182 aaattaatagcaaactcaattgcccttaaagatactactatttaaggaaaagctatttta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaattaatagcaaactcaattgcccttaaagatactactatttaaggaaaagctatttta 441
Query: 242 aaagtaaagttaaatgactacataaggaggaggcagagctagtgaggctctgaagctgtg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaagtaaagttaaatgactacataaggaggaggcagagctagtgaggctctgaagctgtg 501
Query: 302 atgagtgggaacaagagtctgggactagggaatgctcctacttgagacatatgcccacag 361
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 502 atgagtgggaacaagagtctgggactagggaatgctcctacttgagacat--gcccacag 559
Query: 362 gtagcacagagctgctaagacagcagtggggtgcagcaaggctggaatgtggcctcaagt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtagcacagagctgctaagacagcagtggggtgcagcaaggctggaatgtggcctcaagt 619
Query: 422 tctacccagaaaagtctgttcctactgctcagctctgccctcataggcagtgcaaattct 481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctacccagaaaagtctgttcctgctgctcagctctgccctcataggcagtgcaaattct 679
Query: 482 cacagaaatggagtaagaatcccaggagaatgtcatctgtgatgccgtcaatcactctgt 541
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 680 cacagaaatggagtaagaatcccaggacaatgtcatctgtgatgccgtcaatcactctgt 739
Query: 542 agaagactgtgcccaactccttcagagtgccatcaactgctgcatgttcacttacacttt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agaagactgtgcccaactccttcagagtgccatcaactgctgcatgttcacttacacttt 799
Query: 602 tcaggtggtgttattgtaatagtctgagctgtaaattcttcatcaaaatatcggg 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcaggtggtgttattgtaatagtctgagctgtaaattcttcatcaaaatatcggg 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1054
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1044
Effective search space: 674424
Effective search space used: 674424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_h03.g1 MSMg01no177_h03.g1 CHROMAT_FILE:
MSMg01no177_h03.g1 PHD_FILE: MSMg01no177_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:01 2005
(633 letters)
>mm_chr1_179127052_179128082
Length = 1031
Score = 1205 bits (623), Expect = 0.0
Identities = 630/633 (99%), Gaps = 2/633 (0%)
Strand = Plus / Minus
Query: 1 tctgatgtaatagattatcagttcaaaaattaactttggagacttattctggagctgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tctgatgtaatagattatcagttcaaaaattaactttggagacttattctggagctgaag 772
Query: 61 actttaaataattttaaaatgataagattgataatgataagaatcttctgagacaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 actttaaataattttaaaatgataagattgataatgataagaatcttctgagacaaaaat 712
Query: 121 cttgaacaggcttgtttattttgcagaacttaacaagtatttaaatagagcaaaatagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cttgaacaggcttgtttattttgcagaacttaacaagtatttaaatagagcaaaatagaa 652
Query: 181 ctatagagctacagtagctttcattatcaagctataagttggatcatttttttcccttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctatagagctacagtagctttcattatcaagctataagttggatcatttttttcccttaa 592
Query: 241 agtatggcattttttccttttgcatggcgctaacaggtggcattaaatgaagaatgggag 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 591 agtatggcattttttccttttgcatg--gctaacaggtggcattaaatgaagaatgggag 534
Query: 301 atgacttttattcattaacatagtttaattttgagttagttttgaaatttataagtcttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atgacttttattcattaacatagtttaattttgagttagttttgaaatttataagtcttg 474
Query: 361 aatgaacttatgcctgaaaaataaggatttgaaaaataaaaagggtttgagatcaagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aatgaacttatgcctgaaaaataaggatttgaaaaataaaaagggtttgagatcaagtgt 414
Query: 421 gcttgactgccttactaataggcggagaagtccattttcttcccatggagctttatacat 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcttgactgccttactaataggtggagaagtccattttcttcccatggagctttatacat 354
Query: 481 cctgtcacatagaaacagtttgtcacatgtgtttgtagccagttttagacagatcattga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cctgtcacatagaaacagtttgtcacatgtgtttgtagccagttttagacagatcattga 294
Query: 541 ttatatatcattcaggcataaaagataattctgacatccttctttgttccttaaatacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttatatatcattcaggcataaaagataattctgacatccttctttgttccttaaatacct 234
Query: 601 tgcctctataaaatggcatatatattagcttga 633
|||||||||||||||||||||||||||||||||
Sbjct: 233 tgcctctataaaatggcatatatattagcttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1031
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1021
Effective search space: 636083
Effective search space used: 636083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
