TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCGTCTTAGCAACTTACTTAGGTGACGAGACGAGTAATTCACATAC
TCTCCCTGCGAAATTGGCGTGAGCGCACACTGAATAAGGTGCTGATTCCA
GACTAAGTAGAGAGACAGAACTGTCTGCTACGATTCCTTAGCTCTGTCTC
CAACAAGGTACATACTGATGCAATNCATTNAAATNNNCGNNATAATCACA
TGAGTCCGCATGTACATAAAAGCAGTACTCCCTGGGAAATATCGGGGCCT
TTTTAAACGCCCGGCTTATTAACGGGTTTAAATTAAAAGGGCGGAAAACC
TCATGGGATTTTTCCCCTATATTTTCCCGGGGAAGGGAGGGGAAAAATGC
CCTTGGGTGGTAAACCCCCCCCCCCCCACCAGGGGGGGGGGNNNNNNNNC
CAAAAAAAAAAAAAAAAANNAAAAATTACNNNNNNTTCACTACACACCCA
TCTGTTCTTTCTATTCTTCTCTCCCACCATTTTTTCACCGCTTCGTTAAC
TGCGTTATATTATGATTTTTTCTACGTTGTCAATACCTTTTTTTCCNCAA
TTCGGCCTGACGAGGACCATATCATAATCTATTCCTTTTTTCTATCTCCC
CCTTTACTCTCACCCTTAATTTTGTCCGCTTGTTTGGCCGCCCTTTTTTT
CCATATCCCATTTTATCCCGCCGCTCTCTCTATTTTTTTTTGCTTCGCGC
GTTCATTGACATGCATGATAANTTTACTATACCGTTTCCGCCCGATTTCT
TCTTTCGG

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTTATTTTGTAAAAATAAACCCTA
AGTAAGACACTGGTAGAATTTCCATCTCCCCAGGATGGTCTGGATTAACA
GGACTTGACATGTGTATTCCTAAATTATTTTTTTTCTAAAATTGCATAAA
CATCAAGAGAGATCAAAAAGTTCAAGTAACAAACAGCAAAAAATAAATAA
TTAAATAAATAAAAATAAAAATTACAAAAAAAAGTGAAAAAGAGGAGAAA
GACACTGAGTCTGTTGAGGATCCCAAAGACAAATAATTTAAATCTATTTT
TATTTAAGTAAAACAAAACAAAAAAAAAGGATGTAAAACAAAGAGTTTGT
TGTTCTAAGCTCAGGAGTAAAAGGAGGCCGTTAAGAAATTGTTTTCTTTA
ATTTTTAAAATACCAAAAAAATTCAGAATAAGTCCTTTATTATTAAAGAC
TACACAAAAATAAGATTCATACAATCAATAATCAGATATTTTATTTAAAG
TTTAGATAAGTAAAATTAATATCCTTTTTATTGCTACAGAGAGCCTCACA
TGTTATCATTAAAGTAAGATTGGAGGGGGGGAGCTCACTCTCACATTTGC
TTTCACAGAAGTGTCATTTGATCAGAAGTGATGAATGCAACCATTGTTGT
TGAACATTTTTGCGTTATCATAGATTCTGAAGGAATAAATAATT

Query= MSMg01no177_j08.g1 MSMg01no177_j08.g1 CHROMAT_FILE:
MSMg01no177_j08.g1 PHD_FILE: MSMg01no177_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:10 2005
         (626 letters)



>mm_chr1_41881958_41882987
          Length = 1030

 Score = 1085 bits (561), Expect = 0.0
 Identities = 600/615 (97%), Gaps = 8/615 (1%)
 Strand = Plus / Minus

                                                                        
Query: 19   aaaccctaagtaagacactggtagaatttccatctccccaggatggtctggattaacagg 78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 aaaccctaagtaagacactggtagaatttccatctccccaggatggtctggattaacagg 971

                                                                        
Query: 79   acttgacatgtgtattcctaaattattttttttctaaaattgcataaacatcaagagaga 138
            ||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 970  acttgacatgtgtgttcctaaatta-tttttttctaaaattgtataaacatcaagagaga 912

                                                                        
Query: 139  tcaaaaagttcaagtaacaaacagcaaaaaataaataattaaataaataaaaataaaaat 198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  tcaaaaagttcaagtaacaaacagcaaaaaataaataattaaataaataaaaataaaaat 852

                                                                        
Query: 199  tac---aaaaaaaagtgaaaaagaggagaaagacactgagtctgttgaggatcccaaaga 255
            |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  tacaaaaaaaaaaagtgaaaaagaggagaaagacactgagtctgttgaggatcccaaaga 792

                                                                        
Query: 256  caaataatttaaatctatttttatttaagtaaaacaaaacaaaaaaaaaggatgtaaaac 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  caaataatttaaatctatttttatttaagtaaaacaaaacaaaaaaaaaggatgtaaaac 732

                                                                        
Query: 316  aaagagtttgttgttctaagctcaggagtaaaaggaggcc-gttaagaaattgttttctt 374
            ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 731  aaagagtttgttgttctaagctcaggagtaaaagggggcccgttaagaaattgttttctt 672

                                                                        
Query: 375  taatttttaaaataccaaaaaaattcagaataagtcctttattattaaagactacacaaa 434
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 671  taatttttaaaataccaaaaaaattcagaatatgtcctttattattaaagactatacaaa 612

                                                                        
Query: 435  aa-taagattcatacaatcaataatcagatattttatttaaagtttagataagtaaaatt 493
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  aaataagattcatacaatcaataatcagatattttatttaaagtttagataagtaaaatt 552

                                                                        
Query: 494  aatatcctttttattgctacagagagcctcacatgttatcattaaagtaagattggagg- 552
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 551  aatatcctttttattgctacagaaagcctcacatgttatcattaaagtaagattggaggt 492

                                                                        
Query: 553  -gggggagctcactctcacatttgctttcacagaagtgtcatttgatcagaagtgatgaa 611
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491  ggggggagctcactctcacatttgctttcacagaagtgtcatttgatcagaagtgatgaa 432

                           
Query: 612  tgcaaccattgttgt 626
            || ||||||||||||
Sbjct: 431  tggaaccattgttgt 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1030
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1020
Effective search space:   628320
Effective search space used:   628320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)