BAC Information

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BAC

Clone NameMSMg01-177L07
Chromosome1 (Build37)
Map Location 82,191,989 - 82,315,347
singlet/doubletdoublet
Overlap geneIrs1
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneRhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177L07.T7 (MSMg01no177_l07.b1)MSMg01-177L07.TJ (MSMg01no177_l07.g1)
ACCAG372012AG372013
length738741
length of high quality
(start - end)
457 (85 - 541)589 (77 - 665)
definitionCHROMAT_FILE: MSMg01no177_l07.b1 PHD_FILE: MSMg01no177_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:19 2005CHROMAT_FILE: MSMg01no177_l07.g1 PHD_FILE: MSMg01no177_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,314,891 - 82,315,347)(82,191,989 - 82,192,577)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGCAGGTCTTGCCTGACCCAGAACCACAGCTATCTATCTATCTTA
CACGGAAAATAATAGAACATTAGGAGTCTCTGAAAAACAATCGCTTCATG
ATGGGACAGTATCACTTTGGTGGTAAGGTTAACTATTATGGATAGAAACA
GGTATCACAAGTGATATATTTACATGACAATTTATTGCCCATAATATTCT
GGAGTCTCAGCATGGCCTTGGCACCAGTGCTCTCTAGTCAAAGCTATGTG
TTACACAGGCCACCACTAGTCACTGACCCTTTTTAACACTGTAATGAGCC
TAGACTCAAGAACAGTAGCTTCAGACCCCAAATGATTATTTCTTCCTCTA
GGTGAACCGTTGGACAAAGGAATAGTTCTTAGAAAATGTTCCATGTAGTA
ATTTGGAGAAATAAAATAAAAATCATCCCGTTGGGAGCCTGTCCACTTAA
CTGTGACCGTCCCCAATGGACATGAGCCCTTCTTTGCTAAGATGGAGCCA
TACCATATATAGGGACAAAAGCTAAGGACAGAAACTGCTTTTGGTGGCGG
GGTGCTAGCCACCACTGTATGCTTCTTTGTAACTCTGGTCTGGCCTTTAC
CAAACTACAGGACAAACTTAGGTATAACTAAGTTGAAGAAACAAGAAGGG
CAAAGAACTTTTAACCATCTTGGGACAATTTCTAATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCTAGATGTGTAGAGAGGTAAC
TCACATTTTGATACAAGACTAAGGAGTGCTCAATCAAGAAACGAAAGTGA
AAAATTGCCCCGAAGCAGGAAGGCAGGTGTACAATCAATCTAGACTTCCT
AACTGGTTCCCTTTAATTAGCGCTCTAGCCTCCCATGGAGGCTGGGAGGC
CCGAGGTCTACCTTCAGGCATTGGTTAGATGTGAGGATCACATATTCTTT
TGGTGGCCTTCATTGTTCCAGGCAGACACTTTCTGGGAGACTAGCACCAT
CCTAGGGAGGCAGCCTTGAGCTGTTAGAGATCATGTGAGCTTTTTATTCT
AGTCGTCACAGGCCAAGGTCAAGACCCTACTAAGACAAGGCCTCAGACCA
GATGGCCAGAGTTTGATAAGGGAGAGAATCACTTTCCTAATTGTGAGCAT
CCATGACTCATAGTAATAAAGGGAATGGAAGTACGTGTGGAGAAAGCTTT
AGTGCCTGAATCATTATTGATCATTTTTTTCAATCACCTCAGGCAATGTA
GATCTATAAATATGACCATAAGAAATTGCTAACATTTGACCACTTGTGAC
CCACAAAAAGCAGCAATTTCATGAACTGTAACTTAATATGATCTGCCTAG
CATTAAAATGCTCTGTGGAATCAATAGAAAAAAACAATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_l07.b1 MSMg01no177_l07.b1 CHROMAT_FILE:
MSMg01no177_l07.b1 PHD_FILE: MSMg01no177_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:19 2005
         (457 letters)



>mm_chr1_82314691_82315547
          Length = 857

 Score =  853 bits (441), Expect = 0.0
 Identities = 453/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatctatctatcttacacggaaaataatagaacattaggagtctctgaaaaacaatcgc 60
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 657 ctatctatctatcttacacagaaaataataaaacattaggagtctctgaaaaacaatcgc 598

                                                                       
Query: 61  ttcatgatgggacagtatcactttggtggtaaggttaactattatggatagaaacaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttcatgatgggacagtatcactttggtggtaaggttaactattatggatagaaacaggta 538

                                                                       
Query: 121 tcacaagtgatatatttacatgacaatttattgcccataatattctggagtctcagcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tcacaagtgatatatttacatgacaatttattgcccataatattctggagtctcagcatg 478

                                                                       
Query: 181 gccttggcaccagtgctctctagtcaaagctatgtgttacacaggccaccactagtcact 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gccttggcaccagtgctctttagtcaaagctatgtgttacacaggccaccactagtcact 418

                                                                       
Query: 241 gaccctttttaacactgtaatgagcctagactcaagaacagtagcttcagaccccaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaccctttttaacactgtaatgagcctagactcaagaacagtagcttcagaccccaaatg 358

                                                                       
Query: 301 attatttcttcctctaggtgaaccgttggacaaaggaatagttcttagaaaatgttccat 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 357 attatttcttcctctaggtgaaccgttggagaaaggaatagttcttagaaaatgttccat 298

                                                                       
Query: 361 gtagtaatttggagaaataaaataaaaatcatcccgttgggagcctgtccacttaactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtagtaatttggagaaataaaataaaaatcatcccgttgggagcctgtccacttaactgt 238

                                                
Query: 421 gaccgtccccaatggacatgagcccttctttgctaag 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gaccgtccccaatggacatgagcccttctttgctaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no177_l07.g1 MSMg01no177_l07.g1 CHROMAT_FILE:
MSMg01no177_l07.g1 PHD_FILE: MSMg01no177_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:19 2005
         (589 letters)



>mm_chr1_82191789_82192777
          Length = 989

 Score = 1131 bits (585), Expect = 0.0
 Identities = 588/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctagatgtgtagagaggtaactcacattttgatacaagactaaggagtgctcaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctagatgtgtagagaggtaactcacattttgatacaagactaaggagtgctcaatca 260

                                                                       
Query: 61  agaaacgaaagtgaaaaattgccccgaagcaggaaggcaggtgtacaatcaatctagact 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaacgaaagtgaaaaattgctccgaagcaggaaggcaggtgtacaatcaatctagact 320

                                                                       
Query: 121 tcctaactggttccctttaattagcgctctagcctcccatggaggctgggaggcccgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctaactggttccctttaattagcgctctagcctcccatggaggctgggaggcccgagg 380

                                                                       
Query: 181 tctaccttcaggcattggttagatgtgaggatcacatattcttttggtggccttcattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaccttcaggcattggttagatgtgaggatcacatattcttttggtggccttcattgt 440

                                                                       
Query: 241 tccaggcagacactttctgggagactagcaccatcctagggaggcagccttgagctgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaggcagacactttctgggagactagcaccatcctagggaggcagccttgagctgtta 500

                                                                       
Query: 301 gagatcatgtgagctttttattctagtcgtcacaggccaaggtcaagaccctactaagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagatcatgtgagctttttattctagtcgtcacaggccaaggtcaagaccctactaagac 560

                                                                       
Query: 361 aaggcctcagaccagatggccagagtttgataagggagagaatcactttcctaattgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggcctcagaccagatggccagagtttgataagggagagaatcactttcctaattgtga 620

                                                                       
Query: 421 gcatccatgactcatagtaataaagggaatggaagtacgtgtggagaaagctttagtgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatccatgactcatagtaataaagggaatggaagtacgtgtggagaaagctttagtgcc 680

                                                                       
Query: 481 tgaatcattattgatcatttttttcaatcacctcaggcaatgtagatctataaatatgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaatcattattgatcatttttttcaatcacctcaggcaatgtagatctataaatatgac 740

                                                            
Query: 541 cataagaaattgctaacatttgaccacttgtgacccacaaaaagcagca 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cataagaaattgctaacatttgaccacttgtgacccacaaaaagcagca 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)