BAC Information

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BAC

Clone NameMSMg01-177L17
Chromosome1 (Build37)
Map Location 39,096,184 - 39,096,456
singlet/doubletsinglet
Overlap genenone
Upstream geneEif5b, Rev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
Downstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177L17.T7 (MSMg01no177_l17.b1)MSMg01-177L17.TJ (MSMg01no177_l17.g1)
ACCAG372031AG372032
length720758
length of high quality
(start - end)
489 (63 - 551)273 (77 - 349)
definitionCHROMAT_FILE: MSMg01no177_l17.b1 PHD_FILE: MSMg01no177_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:21 2005CHROMAT_FILE: MSMg01no177_l17.g1 PHD_FILE: MSMg01no177_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCAAGA
ATTTACACACCAACAACTCAATAGAAAATGGGGTATAGAACTCGACAGAA
GGATCAACAGAGGACTTAAATGTTCAATGTCCTTCATCAGGGAAATGGAA
ATCAAAAGGAAAAGGAGATTGCACCTTACATCCAACAGAATGGCTAAGAG
CAAAAACTGAAGGGACAGAACATACTGAGAAGGATGCAGAGTAAGGGATG
TTTCTATACTGTGGAGGGAGGAGAAACTTGCACAACCACTCTGAAATCAA
TTCGGCCTTTTCTCAGAAAATTGGAAATAGTTCTCCCTCAAGACCTAGCT
ATATCACCCAGCTATATCTCCAAAAGATACCCCGCTACCTTAAGACCCAG
CTGTATCACCCACCTATATTCCCAAAAGGTACCCCACTATGTCACAGGGA
CACTTGCTCCTCTGTGTTCATAGCAGCTTTCTTCCTAATAGCCAGAATGT
ATAGACAACCTAGATGACCTTCAACTGAAGAATGGATAAAGAAAATGTGG
ATCATCTGCACAAGGTAATACCACTCAGCTAGTAAAAACCAGGACAATAT
GAATTTTGCAGGCAAATGGACGGAACTAAAAAACGCCATCCTGACCGAGG
TAACGCTGATTCTAAAGGACGCGACAAGTATGCTTTCACTTACACGTGGA
TATTAGCCAAAACTACAGTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTCCCTGCAGAGAGAGGCCT
TGACCTAGGTGCTAACAGAAGGAGGAAGATAGTGAGAAGTTTGATAGTGC
CTGCAGGAGTCTGGGTAAAAGGGTGGGCCATGCCTTGGAAGCCCAGGTAG
CCCAGGTAGGAGAGGAGGTGACCCACCCGGCAGGCAGCCATGAAACCACA
CTGGACTTTTTCATGCCAAGCTGCAATGGTGGTGGCAGGCCCCGCTGGTG
TGGAGGCATTATCTAGCGAATTCCTGTTTCCCCCTTTCATACGGGGAAGA
AAGGAGAAGAGAAAACACGAGGAGCATTTAAGTCCTGTGATGCTTCCTGT
TAAGCAACTGTTTTCCCTCCCATTCCAACCCTACTACCATGTGCTCTTGT
TGGATGCGCCTGCTGTGCTCCTTCCCTTCCTGCCGTCTGCACTGATCTAT
TTCCTACTTTATCATCGGCTTCTCAGCCAACATTTTCCTCTCATGTCATT
TATTCCACACTTTACGCGCTGCTGTCCCCGATCTCATATTCCCCATTTTG
ATCGCTGTTATCTTCGCCACTCGTTTAAATTCTAGTATAAATTGGCACCC
ATAACTTCTCATTACCCTTTTGAACTTTTTTTCCCCCTTTTTCTTCCTTC
CCGCCCCTTTCTACTCTTTTTTTCTTTTCTCACCTATTTCGTCTTTTCCT
CCATACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_l17.g1 MSMg01no177_l17.g1 CHROMAT_FILE:
MSMg01no177_l17.g1 PHD_FILE: MSMg01no177_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:21 2005
         (273 letters)



>mm_chr1_39095984_39096656
          Length = 673

 Score =  489 bits (253), Expect = e-143
 Identities = 268/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggctccctgcagagagaggccttgacctaggtgctaacagaaggaggaagatagtgag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 473 aaggctccctgcagagagaggccttgacctaggcgctaacagaaggaggaagatagtgag 414

                                                                       
Query: 61  aagtttgatagtgcctgcaggagtctgggtaaaagggtgggccatgccttggaagcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aagtttgatagtgcctgcaggagtctgggtaaaagggtgggccatgccttggaagcccag 354

                                                                       
Query: 121 gtagcccaggtaggagaggaggtgacccacccggcaggcagccatgaaaccacactggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtagcccaggtaggagaggaggtgacccacccggcaggcagccatgaaaccacactggac 294

                                                                       
Query: 181 tttttcatgccaagctgcaatggtggtggcaggccccgctggtgtggaggcattatctag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttttcatgccaagctgcgatggtggtggcaggccccgctggtgtggaggcattatctag 234

                                            
Query: 241 cgaattcctgtttccccctttcatacggggaag 273
            | | ||||||||||||||||||||||||||||
Sbjct: 233 tgtagtcctgtttccccctttcatacggggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)