Query= MSMg01no177_p05.b1 MSMg01no177_p05.b1 CHROMAT_FILE:
MSMg01no177_p05.b1 PHD_FILE: MSMg01no177_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:37 2005
(683 letters)
>mm_chr1_20950546_20951628
Length = 1083
Score = 1207 bits (624), Expect = 0.0
Identities = 672/706 (95%), Gaps = 28/706 (3%)
Strand = Plus / Plus
Query: 6 aattacacacttatctttaagtgagttagaaagtttaggaacattattccatcttaactt 65
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aattacacacttatttttaagtgagttagaaagtttaggaacattattccatcttaactt 237
Query: 66 gccttaccttgccttcagagctaaagtggaacatgtttttgtgaaattttagattgtaga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gccttaccttgccttcagagctaaagtggaacatgtttttgtgaaattttagattgtaga 297
Query: 126 tgcttgtcttaaaacagtgccagaattgtgtatatttaagatatctagttctcttagcat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgcttgtcttaaaacagtgccagaattgtgtatatttaagatatctagttctcttagcat 357
Query: 186 gatgccttcctactatataagtgtgcgtatatatgtatgtctatatgtg----------- 234
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gatgccttcctactatataagtgtgcgtatatatgtatgtctatatgtgtatatataaat 417
Query: 235 -----------------tatatatataaatatatacatatatacatacatatatatatat 277
|||||||||| ||||||| ||||||| ||| ||||||||||||
Sbjct: 418 atatacatatatatatatatatatatatatatatatatatatatatatatatatatatat 477
Query: 278 gaaagtgtgtgtatatataatgaataaatacctcagacagttatcagctatcatctgcat 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaaagtgtgtgtatatataatgaataaatacctcagacagttatcagctatcatctgcat 537
Query: 338 tgtaaagttgggtcactggagatagtatctctaatacatgcccagtctgtcaacaactcg 397
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgtagagttgggtcactggagatagtatctctaatacatgcccagtctgtcaacaactcg 597
Query: 398 ttagtatcatcatatcacacttattttcagagcatgatttatgacttttaaaaccttcag 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttagtatcatcatatcacacttattttcagagcatgatttatgacttttaaaaccttcag 657
Query: 458 aaaggtgttgacattaattgtgaaatgttaggactttttggaaagccaaggcattgaatt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aaaggtgttgacattaattgtgaaatgttaggactttttggaaagccaaggcattgaatt 717
Query: 518 aaatccatcagagaagatacccctggatccttacactcaactccggaaagaacctgtgcg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaatccatcagagaagatacccctggatccttacactcaactccggaaagaacctgtgcg 777
Query: 578 caaatatgtcaccccgtcagactttgaccaactgaaacagtttctcacctttgacaaaca 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 caaatatgtcaccccgtcagactttgaccaactgaaacagtttctcacctttgacaaaca 837
Query: 638 ggtaagccacctaatcaagtaggcttactcctgttcaaatgtggac 683
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ggtaagccacctaatcaagtaggcttactcctgttcaaatgtggac 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_p05.g1 MSMg01no177_p05.g1 CHROMAT_FILE:
MSMg01no177_p05.g1 PHD_FILE: MSMg01no177_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:37 2005
(657 letters)
>mm_chr1_21022210_21023266
Length = 1057
Score = 857 bits (443), Expect = 0.0
Identities = 497/529 (93%), Gaps = 27/529 (5%)
Strand = Plus / Minus
Query: 147 tccaggatgtgactattgaatcctgctctggaaagttcctctatgtctgcgtgccctggg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tccaggatgtgactattgaatcctgctctggaaagttcctctatgtctgcgtgccctggg 998
Query: 207 tgaagggccactagagtgcgggcgaaaaggtggggtttcagttactttagcaacagaaga 266
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 997 tgaagggccactagagtgcgggcgaaaaggtggggtttcagttactttagcaacggaaga 938
Query: 267 taaggtatcggtcagctgctgggcagtggtagcacatgcttttaatcccagcactcggga 326
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 937 taaggtatcggtcagctgctgggcagtggtagcacatgcctttaatcccagcactcggga 878
Query: 327 ggcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtgagtttcagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtgagtttcagg 818
Query: 387 acaggacagagaaaccctgtctcgaaaagccaaaaaaaaaagaaa--------------- 431
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 817 acaggacagagaaaccctgtctcgaaaagccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa 758
Query: 432 --gaaaagagaaaaaaaaagaaaggtatcgttcagttgtctgtcttgggaatcttaccag 489
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 757 aagaaaagagaaaaaaaaagaaaggtatcattcagttgtctgtcttgggaatcttaccag 698
Query: 490 ttgaggccatatgaaacaagacaagcaaaaaacaagagagacaatggactcagagcagcc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttgaggccatatgaaacaagacaagcaaaaaacaagagagacaatggactcagagcagcc 638
Query: 550 tgcttaatttttttttttttttgagcgcctgtggtgaccaactgagcatggtagtgccag 609
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 637 tgcttaattttttttt------gagcgcctgtggtgaccaactgagtatggtagtgccag 584
Query: 610 ttttccctg-ccccaggaaagcatactgt-gcaggagacaaaagcattt 656
|||||| || ||||||||||||||||| | |||||||||||||||||||
Sbjct: 583 ttttcc-tggccccaggaaagcatact-tcgcaggagacaaaagcattt 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
