BAC Information

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BAC

Clone NameMSMg01-178C06
Chromosome1 (Build37)
Map Location 113,292,274 - 113,292,556
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178C06.T7 (MSMg01no178_c06.b1)MSMg01-178C06.TJ (MSMg01no178_c06.g1)
ACCAG372315AG372316
length708712
length of high quality
(start - end)
370 (36 - 405)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no178_c06.b1 PHD_FILE: MSMg01no178_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:51 2005CHROMAT_FILE: MSMg01no178_c06.g1 PHD_FILE: MSMg01no178_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAC
TTCACTTTTTTAATTGGGTTACTTGAGTTGTGCATTTCTAACTTCTTGAG
TTTTTATATAAAGTTTGGATACTAGTCCTTTGTCAAATGTAGGGCTATTG
AAGATTTTTTCCAATCAGTAGGCTGTGCTTTGTCCTATAGACAGGGTCCT
TTCAATTACAGAAGGCTGTCATTTTCATAAGGTCATATTTACTAATTTTT
GATTCTAGAGCCTGTGACATCAGTGTTCAAGACAGTGTTTTTATACCAAT
GCATCCAAGACTATTTCTCATTTTCTGCTTTATTAGCACTAGTGTATCCA
GTTTTAAGGTTAGGTCTCTGGTCAACTTGGAATTGAGTTTTGTACAGGAT
GATACACCCACATCTATTTGTATTCTTGTACATGCAGACATACAGTTAGA
CAGGCACCATTTGTTAAAGATGCCTTCTTCTTTCCATTTTATGTTCCTGA
CTTCCTTATGAATATAAAAGTGTCTGCACGCATGTTGGCAAATTTGAGTA
ACTTTGATTTTACTCTGCTCGCCCGCCCCCTTTCTACCTGAATTATTTGT
CCCTTTAACTACCATTGCCCTGTTTTTATCCCCCCTATCCATGTTTTGTC
GATTTCCCGCCTTTTACCCACCTCCTTCATAATTCTTTTCCTATAACTAC
ACCCCACG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGATCCACCTGTCTCTACCC
GCTGAGTAGTGAGATTAATTATTTGTTCCTAAAATGCTTGGCTTTATGGT
TTCATTTAATCATACATATTTATAAATCATACTGTGTTGTATATTAGAAT
TTGAAGAAACTGTAAGACTTCCAATATTGACCATCAATTTACTTTTGATC
ACTTCTAAAACATTGTTCAATAAAAGCTAGAATTAGGAAGCAATTGTCTC
ATGATAGTAAACATAATTTTGATGCCATAAAGTGTGTGAAAAATAAGCTT
TGGAGAAGAAAATAAAGGAGGTGTATTCTTATGTCTTGAGGTATGTGTAT
GCTTTCATCTAAGGTTACCCATAGACCAGGATAGCAATGAATTGAGCTGT
ACCGAAAACAAAATGGTATACTTCCTTAAGTCACTATAAATTTTATTTTG
TAACTCTTTGGTAACTAGATGTCATGGTTTTGAATGTGTAACTTGCAGAT
AACTAAATAGAATTGCAGTATCAACATAATGAGCACACTTGTATGTGAAC
AGTATGAATGTATAAATCTCTCAGAATTCTATAAAATGTAACCTAGTTCT
ATAAGAAACTGTATTGTATATAGATAGATTGATAGATATACATGTTACAG
CACACTGTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_c06.g1 MSMg01no178_c06.g1 CHROMAT_FILE:
MSMg01no178_c06.g1 PHD_FILE: MSMg01no178_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:51 2005
         (283 letters)



>mm_chr1_113292074_113292756
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagggatccacctgtctctacccgctgagtagtgagattaattatttgttcctaaaatg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 483 acagggatccacctgtctctaccccctgagtagtgagattaattatttgttcctaaaatg 424

                                                                       
Query: 61  cttggctttatggtttcatttaatcatacatatttataaatcatactgtgttgtatatta 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 423 cttggctttatggtttcatttaatcatacacatttataaatcatactgtgttgtatatta 364

                                                                       
Query: 121 gaatttgaagaaactgtaagacttccaatattgaccatcaatttacttttgatcacttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaatttgaagaaactgtaagacttccaatattgaccatcaatttacttttgatcacttct 304

                                                                       
Query: 181 aaaacattgttcaataaaagctagaattaggaagcaattgtctcatgatagtaaacataa 240
           | |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 303 ataacatttttcaataaaagctagaattaggaagcaattgtctcatcatagtaaacataa 244

                                                      
Query: 241 ttttgatgccataaagtgtgtgaaaaataagctttggagaaga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttttgatgccataaagtgtgtgaaaaataagctttggagaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)