TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCACTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAATTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGCCCCCCTTACAAGGAGATAATTATGGATCGAATCGGAT
TCTTCTACCTGATAACAACCCGTTGTGTCAGCTTCTATTGTTGAAACTGT
TGTTTTCCCTCTACTGGCTGGTTTTATCCTCCCTGTCCCACCACTTGTGC
CCTTACGTTGCGCCCTTTTTCTTTTTTTTCCCCCCCCCCCCCCCCTTTTG
CTTTTTTATTTTTTTCCTCTTTACACCTCCTATGCCCCTTTTTACCCCCC
CCCTTTTCTCGTTTTTTTATCCAATTTCCATACCCACTGATCTATCTGTC
ATTAATATATTCTTTTCTGTTTTTTCCCCTCCCCCTT

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGGAGGGTTTATTTATGTGCATG
CACAGTGGGACAGTACAAAACTGGAACACTGCAGGAAGTATTGCTTGGTC
ACCAACTTTGAAACATTGTTTAGCTACAAATTCTAAGTGACCTGGGCAGG
GATTTTTTTAGTTATGGAGCTTGGAGTAAGGGACAGGGGCAGGGACAGAA
TGATTATGCATTGGTCTGTTATCCTACAAAACAGATATATAACCACTGGC
ATAATGACTCTGTAAATTTAAATACCATTTTGCACAATTGATGTGCTCCA
TATCAAATTTATTCTGAATTATGTACTCTAGAAAATTGTTTATAGACAAG
AAAAAAGCGTAAAAACATTTATATAATAAGTGTATAATAGGAAATGTATG
CCCACAGGAAATACTTGAGTTAATTACATATTTTATCATTGCATATAATT
CAGCAATAAAGAGAAACGATTTTGGAAACTCAGCATGAATACATTTATGA
AGTACAATTTCTAATGGACATATAGTGTTAAATTAGATAGGTGGATAGAT
AATTTAATTCATGTCATTCAAAATTACTGAAACTTAACTATGTGATATCT
TTCAGTAACATGTAACAAAATGTATTTCCAAAGGAAATAAACTAACAAGG
GCGTATATTCCCCATTGTGT

Query= MSMg01no178_o12.g1 MSMg01no178_o12.g1 CHROMAT_FILE:
MSMg01no178_o12.g1 PHD_FILE: MSMg01no178_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:47 2005
         (540 letters)



>mm_chr1_116749025_116749964
          Length = 940

 Score =  924 bits (478), Expect = 0.0
 Identities = 523/538 (97%), Gaps = 2/538 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttggagggtttatttatgtgcatgcacagtgggacagtacaaaactggaacactgcag 60
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 737 tcttggagggtttatttatgtgcatgcacagtgggacagtacagaactagaacactgcag 678

                                                                       
Query: 61  gaagtattgcttggtcaccaactttgaaacattgtttagctacaaattctaagtgacctg 120
           ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaaatattgtttggtcaccaactatgaaacattgtttagctacaaattctaagtgacctg 618

                                                                       
Query: 121 ggcagggatttttttagttatggagcttggagtaagggacaggggcagggacagaatgat 180
           |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 ggcaggg-gttttttagttatggagcttggagtaagggacaggggcagggacaggatgat 559

                                                                       
Query: 181 tatgcattggtctgttatcctacaaaacagatatataaccactggcataatgactctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tatgcattggtctgttatcctacaaaacagatatataaccactggcataatgactctgta 499

                                                                       
Query: 241 aatttaaataccattttgcacaattgatgtgctccatatcaaatttattctgaattatgt 300
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 498 aatttaaatatcattttgcacaattgatgtgctccatatcaaatttattctgaagtatgt 439

                                                                       
Query: 301 actctagaaaattgtttatagacaag-aaaaaagcgtaaaaacatttatataataagtgt 359
           |||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct: 438 actctagaaaattgtttatagacaagaaaaaaagcataaaaatatttatataataagtgt 379

                                                                       
Query: 360 ataataggaaatgtatgcccacaggaaatacttgagttaattacatattttatcattgca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ataataggaaatgtatgcccacaggaaatacttgagttaattacatattttatcattgca 319

                                                                       
Query: 420 tataattcagcaataaagagaaacgattttggaaactcagcatgaatacatttatgaagt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tataattcagcaataaagagaaacgattttggaaactcagcatgaatacatttatgaagt 259

                                                                     
Query: 480 acaatttctaatggacatatagtgttaaattagataggtggatagataatttaattca 537
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 258 ataatttctaatggacatatagtattaaattagataggtggatagataatttaattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)