CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGACCGCGGA
ATTCACCCTGCTTCCAGGAAAACACTAAACAATGTACAAAATTAGTATGC
AGGATGGTCTGTAATAACACAAGTTTGGAAACAACCCAAACATCCACTAA
AAAGGAACTGAGTGGCTGGAAAACCCCACTTAAGGGACTTCAAAAAATCT
AAGAAGTCCCCCACATTTAACTTCTTTTTTTTTTTAAGCATTTTATTTTA
TTTTATTTTATTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCT
ATCCCAAAAGTCCCCCATACCCTCCCCCCACTTCCCTACCCACTCATTCC
CATTTTTTTTTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATACAG
TCACATTTAACTTCCCCCAGGAAATAAACATATTGTATGCAATTTGAATT
CCCAATGTTTCTCATGTTGCATGGCCCATACTCTCTATCCATTTGGTACA
GGAAACTGTAAAGGTAGACGCTGCTGGAAATATTATAAAATGAATGTGTA
GTTTCCACACTACTCCTGGCTACTATCAGCCCAGGTGGTCACGCTGGTCC
ATTCTTAGCTCGTGGATCTGTATTTTATCTCCAAAATCTCTCCCCCCAGC
TTGTTACTCCCCCTCGGCAGGAAAGTATATTTTATGTGTATGATGACGTT
CCAACCCCTGATTGCCTTTACCCATG

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGCTGCCCTGACTAGGGCTGAGTAA
TTGACCCTAAAGGGAATGCGCCTGTTGTTTTAGGACTGTTTTAATTCATG
TTAATTAACTCAGAACAATGGTCTTTTGAGAAGGTCCTGGCCTCCTCATG
TAATTAAGCAGCCTTCCTTGACTGCTAGCTCCAAATATATTGCTTAAAAC
ATTTTCTTACTATTTAGGGGTTTAAACATTATTTTTGATTCAAACAGTAT
GACAACTCAATGATCTTTTTTCTTTTCACTCACTGGATAAATCAAATGAG
GTGTTTTGTTTTTTGAACTTGATTAGCAAAAAACAGAAAGGAGTTTATTG
TTGTGTCATTTCTAATTCTCACTGTGCATGCATGCCGAATATACTGGATT
CTTTTCTAATGCATCCCACACTAACTGAGTATTTTAAGAGCTGTTTCCTT
CAGTTTGGCTCCTTTGGTAAGTTTTGGCCCTACACATGTCAGCCTGGTGG
ACATAGTTTCTTGAGTTCATTGCTGAAATACTTAGGTTTGCTTCTTCAGA
AGTTGTACTTCACTCTCCTGNTTCAACAGTGGGTTGACCCAGTTGATAAC
TTTGAGAAGACTAATAATAATCACCATATGCAGCTCACTGAAAATAGAAT
TTAAAAATTACCATGGAATTACCC

Query= MSMg01no179_c12.g1 MSMg01no179_c12.g1 CHROMAT_FILE:
MSMg01no179_c12.g1 PHD_FILE: MSMg01no179_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:06 2005
         (546 letters)



>mm_chr1_13101149_13102093
          Length = 945

 Score = 1040 bits (538), Expect = 0.0
 Identities = 544/546 (99%), Gaps = 1/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctgccctgactagggctgagtaattgaccctaaagggaatgcgcctgttgttttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttgctgccctgactagggctgagtaattgaccctaaagggaatgcgcctgttgttttag 686

                                                                       
Query: 61  gactgttttaattcatgttaattaactcagaacaatggtcttttgagaaggtcctggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gactgttttaattcatgttaattaactcagaacaatggtcttttgagaaggtcctggcct 626

                                                                       
Query: 121 cctcatgtaattaagcagccttccttgactgctagctccaaatatattgcttaaaacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctcatgtaattaagcagccttccttgactgctagctccaaatatattgcttaaaacatt 566

                                                                       
Query: 181 ttcttactatttaggggtttaaacattatttttgattcaaacagtatgacaactcaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcttactatttaggggtttaaacattatttttgattcaaacagtatgacaactcaatga 506

                                                                       
Query: 241 tcttttttcttttcactcactggataaatcaaatgaggtgttttgttttttgaacttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttttttcttttcactcactggataaatcaaatgaggtgttttgttttttgaacttgat 446

                                                                       
Query: 301 tagcaaaaaacagaaaggagtttattgttgtgtcatttctaattctcactgtgcatgcat 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 tagcaaaaaacagaaaggagtttattg-tgtgtcatttctaattctcactgtgcatgcat 387

                                                                       
Query: 361 gccgaatatactggattcttttctaatgcatcccacactaactgagtattttaagagctg 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 386 gccgaatatactggattcttttctaatgcatcccacactaactgggtattttaagagctg 327

                                                                       
Query: 421 tttccttcagtttggctcctttggtaagttttggccctacacatgtcagcctggtggaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttccttcagtttggctcctttggtaagttttggccctacacatgtcagcctggtggaca 267

                                                                       
Query: 481 tagtttcttgagttcattgctgaaatacttaggtttgcttcttcagaagttgtacttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagtttcttgagttcattgctgaaatacttaggtttgcttcttcagaagttgtacttcac 207

                 
Query: 541 tctcct 546
           ||||||
Sbjct: 206 tctcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space:   501160
Effective search space used:   501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)