Query= MSMg01no179_e12.b1 MSMg01no179_e12.b1 CHROMAT_FILE:
MSMg01no179_e12.b1 PHD_FILE: MSMg01no179_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:15 2005
(244 letters)
>mm_chr1_89659509_89660152
Length = 644
Score = 468 bits (242), Expect = e-136
Identities = 242/242 (100%)
Strand = Plus / Minus
Query: 1 tacagagttccaggacagccagggctatagagaccctgccttagaatagcatagtaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tacagagttccaggacagccagggctatagagaccctgccttagaatagcatagtaatat 434
Query: 61 cacataactcaaacacctacttatacttggattcttatcatacatctaagcataaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cacataactcaaacacctacttatacttggattcttatcatacatctaagcataaataat 374
Query: 121 catttatctcaccctttgaagcaaatggatacttccctaattgtagcccaagaagtagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 catttatctcaccctttgaagcaaatggatacttccctaattgtagcccaagaagtagaa 314
Query: 181 accaaaagacaaaaaagtacactaccctgtataaagccatccttaatgactttgagtcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 accaaaagacaaaaaagtacactaccctgtataaagccatccttaatgactttgagtcat 254
Query: 241 ta 242
||
Sbjct: 253 ta 252
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no179_e12.g1 MSMg01no179_e12.g1 CHROMAT_FILE:
MSMg01no179_e12.g1 PHD_FILE: MSMg01no179_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:15 2005
(244 letters)
>mm_chr1_89528370_89529013
Length = 644
Score = 398 bits (206), Expect = e-115
Identities = 230/244 (94%), Gaps = 11/244 (4%)
Strand = Plus / Plus
Query: 1 acagtaaaagatcataaagctggctacatagaaaaatataaatgtatacagcaacggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtaaaagatcataaagctggctacatagaaaaatataaatgtatacagcaacggaag 260
Query: 61 ggaaccaacaaacattgttgaaatgaatatcaaaatccacagtagcatatatcagagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ggaaccaacaaacattgttgaaatgaatatcaaaatccacagtagcatagatcagagtct 320
Query: 121 tgtctgataataagcccaggatgatgtttaaaaaaaacaaaaactaaaaacaaaaagcaa 180
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 321 tgtctgataataagcccaggatgatgtttaaaaaaaa----aacaaaaaacaaaaagcaa 376
Query: 181 agagatgaaaagggattcaaagaaagaaaaaaaaaaaaacagaaacagccaagaacaagg 240
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 377 agagatggaaagggattcaaagaaa-------aaaaaaacagaaacagccaagaacaagg 429
Query: 241 acaa 244
||||
Sbjct: 430 acaa 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
