Query= MSMg01no179_g14.b1 MSMg01no179_g14.b1 CHROMAT_FILE:
MSMg01no179_g14.b1 PHD_FILE: MSMg01no179_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:25 2005
(273 letters)
>mm_chr1_38513704_38514376
Length = 673
Score = 474 bits (245), Expect = e-138
Identities = 263/269 (97%)
Strand = Plus / Minus
Query: 5 gaattcctaatgatgccacccttaatgtatgacttagggcatgtgggagtgtagagttta 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattcctaatgatggggcccttaatgtatgacttagggcatgtgggagtgtagagttta 414
Query: 65 atttttcagttggcttattgcagctcttaacaagtgcggctgttagtaaatagacagtta 124
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 413 atttttcagttggtttattgcagctcttaacaagtggggctgttagtaaatagacagtta 354
Query: 125 aattaaactcatgaatatccgttactgttcttaaaatagaaacaaaagcctggccctgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aattaaactcatgaatatccgttactgttcttaaaatagaaacaaaagcctggccctgct 294
Query: 185 actgctgcctgaactgctgtgtggaagtggacggggtactgcattctgggtcgggagtca 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 293 actgctgcctgaactgctgtgtggaagtggacagggtactgcattctgggtcgggagtca 234
Query: 245 gggatgaacacaggagaggagagagggca 273
|||||||||||||||||||||||||||||
Sbjct: 233 gggatgaacacaggagaggagagagggca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no179_g14.g1 MSMg01no179_g14.g1 CHROMAT_FILE:
MSMg01no179_g14.g1 PHD_FILE: MSMg01no179_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:25 2005
(488 letters)
>mm_chr1_38360457_38361343
Length = 887
Score = 882 bits (456), Expect = 0.0
Identities = 477/484 (98%), Gaps = 1/484 (0%)
Strand = Plus / Plus
Query: 1 ggccctcaagctggactgcaagcaccatacccacccagccatccccctatgccgcaatag 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ggccctcaagctggactgcaagcaccatacccacccagccatctccctatgccgcaatag 260
Query: 61 ttttcagaggttatcggaggtctgggatacagcctgtttatgatgcatagccaagaggtt 120
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttt-caaaggttatcggaggtctgggatacagcctgtttatgatgcatagccaagaggtt 319
Query: 121 ggatggaggaactcctctttggtcggggcacaaccaggtgccacgagaactggtcatcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggatggaggaactcctctttggtcggggcacaaccaggtgccacgagaactggtcatcgg 379
Query: 181 ctcaccagacaacgtttttggacatctctcccttcaaaactgtacttgtttcttcccgac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 ctcaccagacaacgtttttggacatctctcccttcaaaactgtacttgtttcttgccgac 439
Query: 241 tgtttcaggctagccacgtggctccctgtccctgaggtttccatctatctctggctgtca 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgccacaggctagccacgtggctccctgtccctgaggtttccatctatctctggctgtca 499
Query: 301 ggagagagactggcttcgggaacttgttgaagtctttagtggcatgcaggcagaatggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggagagagactggcttcgggaacttgttgaagtctttagtggcatgcaggcagaatggct 559
Query: 361 cggttctttatctgaaccagtcacaccattactttaaaagagcttgtaaggtgtaggcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cggttctttatctgaaccagtcacaccattactttaaaagagcttgtaaggtgtaggcca 619
Query: 421 agaggaaaggcagaagagacaggatggtttttattttagaaattagaaggcatcttatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaggaaaggcagaagagacaggatggtttttattttagaaattagaaggcatcttatct 679
Query: 481 ggaa 484
||||
Sbjct: 680 ggaa 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
