BAC Information

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BAC

Clone NameMSMg01-180H06
Chromosome1 (Build37)
Map Location 91,177,894 - 91,327,406
singlet/doubletdoublet
Overlap geneEG665688
Upstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
Downstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180H06.T7 (MSMg01no180_h06.b1)MSMg01-180H06.TJ (MSMg01no180_h06.g1)
ACCAG373927AG373928
length733726
length of high quality
(start - end)
249 (63 - 311)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no180_h06.b1 PHD_FILE: MSMg01no180_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:41 2005CHROMAT_FILE: MSMg01no180_h06.g1 PHD_FILE: MSMg01no180_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,327,167 - 91,327,406)(91,177,894 - 91,178,182)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGC
CAATTTCGAAAACCTCCCCTCCCACTCTTCCTCCCCCCCTCCCCCCACTA
CTGGGAAGTTTTTTCCACTTCCAGCTAAGGCAGGGGTTCAGTCCATCTTC
TTCCGGAGTAGGGAGTGTGGAACAGGGGGAAATTCTACCCCTGGCTTGGC
AGCACACTGCAGTTGGTCAGAATTAAACTGTGCAATACAGGTGTGAGCCA
CAGAGGCACCCAGATGATTGGTAAGGCTCCAGGCTCCTCTTGGGACCCCG
TAGAGATGATTATATTTTATCTGATTAATGAGAAATTTAAAGAAGATCCT
ATTTGTTTTCTACCCCCCACCGGCTTCTACAAATTCCTCAGACCAAGGCT
ACTGAGGCACCACAAGAAAACAATGGGTTTAATTGTCCATTATTGAAACA
CAGCAGGGCACAGTGGATTGTCAGGGAACTGGCTGTGTAAAGGAGGTGGC
ATCCAGATCCTACCTCTTTCTTTTCTATTGTCCGGGTACAGAGACGTTTT
CTTCACCAATGATATATCAAGGGTTATTTTCCTTGAAGCCAGTGCTCGCT
CTGATATTTTATCTGTGGAAGTCCACTGCTGTCCTGTTTTTTTTGGGTCC
CTTTTTTTGTTGTTTTTTGTTCCCCGCCTTGTCTTCTCTCCACCCCCACC
CCCTGCATTTGCTCTGTTTAACTTAACCCTTCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGATATTTGTAGCATCCACTCTGCAAACATGC
TGCCTTCCAATGTCACATATTTTTAAAGATATTTGCCCTTTCTTGCCTGT
CACCAAAAGGATTGCTTTAAGAAAACAAACTTAAAAGCACAAATTGTTCT
GCCTTTGACTCTCTTGACCCTGGACTGTGAGTCTCCAGACAGCTGTGTGT
CCTCTGCAACAGCAGGGACCACAGTGAGCCTTCATGTATCTGCCCTTGTT
GCCCACAACTCTTGCAAGGCTGACCAACTGCTTCTAGCAAGGTAACATTC
ACTATGCTGTACATGTGCAAAAACATAGATGATGTGGGGCTGGGAGATGC
CTTAGGCACCACATTGCCTGCTGTGCAAGCATGAGGGCCTGAGTTCAGAT
CCCACCACTCATGTAAAAACTTACTTGTAGTAGCCCAGGATGGGGACCCT
AGTGCTCTGGCGACGGAGAGAGGTAGATCACCAAAGCTCACTGGCCAGCC
AGTCTAGTCAGTTAGGATGCTTGAGTTCAATAACAGACGCTGACTTACTA
AAGAAAACCAGAGCCATTAATGAAAACATCAGACGCATATGTCTGTCTTC
CACTGCACGCTCACAACGCGAATACCCCCCTCACAAAAATGTACCAACAC
AAATACTTACTCATATATTCCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_h06.b1 MSMg01no180_h06.b1 CHROMAT_FILE:
MSMg01no180_h06.b1 PHD_FILE: MSMg01no180_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:41 2005
         (249 letters)



>mm_chr1_91326959_91327607
          Length = 649

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 9   cccactcttcctccccccctccccccactactgggaagttttttccacttccagctaagg 68
           ||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 448 cccactcttcctcaccccctccccccactactgggaaggcttttccacttccagctaagg 389

                                                                       
Query: 69  caggggttcagtccatcttcttccggagtagggagtgtggaacagggggaaattctaccc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caggggttcagtccatcttcttccggagtagggagtgtggaacagggggaaattctaccc 329

                                                                       
Query: 129 ctggcttggcagcacactgcagttggtcagaattaaactgtgcaatacaggtgtgagcca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 328 ctggcttggcagcacactgcagttggtcagaattaaactgtgcaatacaggtgtgggcca 269

                                                                       
Query: 189 cagaggcacccagatgattggtaaggctccaggctcctcttgggaccccgtagagatgat 248
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagaggcacccagatgattggcaaggctccaggctcctcttgggaccccgtagagatgat 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no180_h06.g1 MSMg01no180_h06.g1 CHROMAT_FILE:
MSMg01no180_h06.g1 PHD_FILE: MSMg01no180_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:42 2005
         (289 letters)



>mm_chr1_91177694_91178382
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatatttgtagcatccactctgcaaacatgctgccttccaatgtcacatatttttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 201 cagatatttgtagcatccactctgcaaacatgctgccttccaaggtcaaatatttttaaa 260

                                                                       
Query: 61  gatatttgccctttcttgcctgtcaccaaaaggattgctttaagaaaacaaacttaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatttgccctttcttgcctgtcaccaaaaggattgctttaagaaaacaaacttaaaag 320

                                                                       
Query: 121 cacaaattgttctgcctttgactctcttgaccctggactgtgagtctccagacagctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaattgttctgcctttgactctcttgaccctggactgtgagtctccagacagctgtg 380

                                                                       
Query: 181 tgtcctctgcaacagcagggaccacagtgagccttcatgtatctgcccttgttgcccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcctctgcaacagcagggaccacagtgagccttcatgtatctgcccttgttgcccaca 440

                                                            
Query: 241 actcttgcaaggctgaccaactgcttctagcaaggtaacattcactatg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcttgcaaggctgaccaactgcttctagcaaggtaacattcactatg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)