BAC Information

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BAC

Clone NameMSMg01-180L01
Chromosome1 (Build37)
Map Location 72,672,326 - 72,672,605
singlet/doubletsinglet
Overlap geneSmarcal1
Upstream geneFn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
Downstream geneAnkar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180L01.T7 (MSMg01no180_l01.b1)MSMg01-180L01.TJ (MSMg01no180_l01.g1)
ACCAG374098AG374099
length750706
length of high quality
(start - end)
68 (43 - 110)278 (73 - 350)
definitionCHROMAT_FILE: MSMg01no180_l01.b1 PHD_FILE: MSMg01no180_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:00 2005CHROMAT_FILE: MSMg01no180_l01.g1 PHD_FILE: MSMg01no180_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATAGTCCTTACCTTCTGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCCTCAACAAGACGCGCGCGCGCTCGCGCTCCCTG
CCGCTCCCGTGCTGGCCCTCGTACACCTACGGCGAGAGAGACGCGGACGG
CGGGGGCGGGGGGGGGGAAAGGCTCTGAAGAGCGTGCGAGAGAGAGAGAG
AAGGGGGGGGAGGGGGGCGAGATACAAAAAAGAGGGAGAGAGCGGCGGGG
AAGAGAGAGAGAGAGTGAGGTGAGGGGGGGAAGGGGGGGGAGGGGAGAGA
GAGTGTTTTTTTTCGCCCGCCCCCCGGGGGAGAGAGGGAGTGAGGGGGGG
CGCGAGTGGTGAAAAAAAAAAAAAAAAAAAGCTGGGGGGGGGGGGGGGGG
GGGGGAGGAGGGGGGAGGGGGAGGGGAGGAGGGGGGGGGAGGGAGAGAGG
GGGGGGGGAGGGAGAGAAGGGAAAGAGGTGAGGAGGAGAAGAGGAGGGGG
GGGGGAGGGGAGGGAAGATAGAGGGGAGGGAGGTTAAGAAGAGGAGGGAG
GGGGAGGGAGGGGGGGGGGAGGAAGAGTTGGGACGCGTGGGCAGGGAGGG
GGAGAGAGGGGAGTGAAGAGCGGGGAGAAGAAGAGGGGGGAGGGGGGAGA
AGATGATGTAAAGGGGGGGCCAGGCAAAAATTAGGGAGAGGGGGAGAAGA

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCTCCATAGTGGTGGTGAATGGTTTCT
TGATCACAGGGTCCCCCTGAAGCCGTCTGAGAACTGACTCCCCACCTCTC
TCTTCCCCAGGGCTCCCCGCCCCCGCCCCCCCCCCCCCCCGGGGCAGTAC
CAGCACACCCTGCATTCTGAGGTGTTTAATCTGTAATCGCTGTATAAATG
TGATCAACATGGTGCCTCGGGGCTGAGCTTTTCCCTCAGCGACACCAACT
GTAGAGCTATCAAGTGTTGTCTACATCAGTACTCTGCTCAGGCTACTGTG
GAGTGCTATCCACATCATGGCACATGCCTGTGGTCCCATGTCCATACAGG
AGGGCATGGGCAGAACCATGGTGGTGGTGGGGGGAGGACTACTCTCAGTG
AAGCTGGTAGGAATGTCTGTGAACAGGCTATGCTGTGTGAACTTAAGTTT
TTGTTTCTTTGAGGTTGCTCTGGAGCCAACTTCTGGATTATACATTAATT
ACATGTTAAGTCTGGCTGTTTTCTTTTAAGAAGCATTTAAAAATATTACT
TTTTTCAATGAATATTGCATATCTTTTAAAGAAAAATTATATTTTATTTT
TCACCCCAATCATACTGTAAACTACTAAAAAAATATTTATGTGACAATAG
ATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_l01.g1 MSMg01no180_l01.g1 CHROMAT_FILE:
MSMg01no180_l01.g1 PHD_FILE: MSMg01no180_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:00 2005
         (278 letters)



>mm_chr1_72672007_72672684
          Length = 678

 Score =  460 bits (238), Expect = e-134
 Identities = 270/282 (95%), Gaps = 6/282 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctccatagtggtggtgaatggtttcttgatcacagggtccccctgaagccgtctgaga 60
           ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 599 atctccatagtagtggtgaatggtttcttgatcacagggtccttctgaagccgtctgaga 540

                                                                       
Query: 61  actgactccccacctctctcttccccagggctcc---ccgcc-cccgccccccccccccc 116
           |||||||||||||||||||||||||||| |||||   ||||| ||| |||||||||||||
Sbjct: 539 actgactccccacctctctcttccccagtgctccctgccgccgccc-ccccccccccccc 481

                                                                       
Query: 117 ccggggcagtaccagcacaccctgcattctgaggtgtttaatctgtaatcgctgtataaa 176
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 480 cc-gggcagtaccagcacaccctgcattctgaggtgtttaatctgtaattgctgtataaa 422

                                                                       
Query: 177 tgtgatcaacatggtgcctcggggctgagcttttccctcagcgacaccaactgtagagct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtgatcaacatggtgcctcggggctgagcttttccctcagcgacaccaactgtagagct 362

                                                     
Query: 237 atcaagtgttgtctacatcagtactctgctcaggctactgtg 278
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcaagtgttgtctacatcagtactctgctcaggctactgtg 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)