BAC Information

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BAC

Clone NameMSMg01-180L05
Chromosome1 (Build37)
Map Location 48,857,225 - 48,857,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903
Downstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180L05.T7 (MSMg01no180_l05.b1)MSMg01-180L05.TJ (MSMg01no180_l05.g1)
ACCAG374106AG374107
length725720
length of high quality
(start - end)
318 (40 - 357)287 (68 - 354)
definitionCHROMAT_FILE: MSMg01no180_l05.b1 PHD_FILE: MSMg01no180_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:00 2005CHROMAT_FILE: MSMg01no180_l05.g1 PHD_FILE: MSMg01no180_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACTCAATACTTAGGGAAAAAATTAAATGAAATGTATACTATCTCCTCATG
AAATAAAAACTTTAACCCGCCCCTAGTTTATTTTACAAGGTCCACATACT
ATAGAATGCCATATCACTAAATGACTTTTATTGAGGATCTATAAACAAAC
ATCTGTTCACTCAAGAAAGGATATCACAAGAGATCCCTAGGAGCTAGGGA
TGCTAGGGTTCAGATCACTCAAAACTCAAGTTTTTCACCTTTCATAACTT
ACATAATAAGTACATTTTGTCTTTCAACTGAATATTATTATTACTTATTA
ATTTTTATTATTACTCACCCTCCAGTTTTGAAATGCTCCCTCCATTTGTC
CTAGTCTGAAACAAATGACATAATGTCATGCTGAGCCTTTTCACTTGTTA
TTTTAGTTTTATCTTCTAGAATTATGTGCATATATATTTATAAACATGTA
TATATTTATAAAAGAAATAATGACAGTATTCATTGTTGAAATCACAACTA
AAGTATTAAAGGTATTAGAATTAGGAACACACTGGATCTCCATATATGGT
TCAGATCTCACATTGCAGCACAGCTATCCATACCCAAATCCCTCCTAGAG
CTAGCTAGGTCTCCCAAGAGTGTTGTCACTCCTAATTTCCAGGCGAGACC
ACTACTATTTCTCCATAACTGGNCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGT
TTATTTGATTTTCTCAAGTCTGCCTTCTTGAGTTTTTTATCTAAGGTCCC
TCCCTTTGAATCCTGAAAGTCTCTCACTTCCCAGGTCTCTGAAAAATTCT
ACAGAGTGCCCCCATCTCCTTCCTCCTGAGGTTGCCTGTTTCATTTCTTT
CTTCTGGTATTGGGGAGTCATTTTCCCTCCACCTCAATACTAGAACATGT
TTCCTTCAATCCCCCTTCTTTCCTCTTTCTCACCCATATACCTGCCTACC
TTCACCCATGCGATTTTTTTCTTCTCCCTCCCAAGTGGAATTGTGATGTT
CACACCCGCGTCTTTCAGCTTGTTGAACTTTTTGAGTTCTGTGGAATATA
TCTTCAGTATTCTGTACTTTCTTTTCTTTTCATTTTGGCTAATATCCACT
TATTAGTGAGTATATACCATGTATGAAGATTTGGGTCTGAGTTAACTCAC
TCACAATAATATTTTATAATAACCTATATATCAGCTATTACATATATAAT
ATAGAATCTTAGGATTTTTCTTATTGCACAGTTAAACCGACATTATCGGC
GCCTTTGGAACGCTTCCATCACTGTATTCTTCTTAATGTTTTATTCCCAT
CCAAACTTTGATATTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_l05.b1 MSMg01no180_l05.b1 CHROMAT_FILE:
MSMg01no180_l05.b1 PHD_FILE: MSMg01no180_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:00 2005
         (318 letters)



>mm_chr1_48857021_48857737
          Length = 717

 Score =  507 bits (262), Expect = e-148
 Identities = 301/314 (95%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactcaatacttagggaaaaaattaaatgaaatgtatactatctcctcatgaaa 64
           ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattccactcaatatttaggg-aaaaattaaatgaattgtatactatctcctcatgaaa 263

                                                                       
Query: 65  taaaaactttaacccgcccctagtttattttacaaggtccacatactatagaatgccata 124
           | |||||   || | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 tgaaaacaggaaacagcccctagtttattttacaaggtccacatacaatagaatgccata 323

                                                                       
Query: 125 tcactaaatgacttttattgaggatctataaacaaacatctgttcactcaagaaaggata 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcactaaatgacttttcttgaggatctataaacaaacatctgttcactcaagaaaggata 383

                                                                       
Query: 185 tcacaagagatccctaggagctagggatgctagggttcagatcactcaaaactcaagttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcacaagagatccctaggagctagggatgctagggttcagatcactcaaaactcaagttt 443

                                                                       
Query: 245 ttcacctttcataacttacataataagtacattttgtctttcaactgaatattattatta 304
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaatctttcataacttacataataagtacattttgtctttcaactgaatattattatta 503

                         
Query: 305 cttattaattttta 318
           ||||||||||||||
Sbjct: 504 cttattaattttta 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)