Query= MSMg01no181_f19.b1 MSMg01no181_f19.b1 CHROMAT_FILE:
MSMg01no181_f19.b1 PHD_FILE: MSMg01no181_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:49 2005
(667 letters)
>mm_chr1_60384320_60385384
Length = 1065
Score = 1197 bits (619), Expect = 0.0
Identities = 644/653 (98%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaacccatatccccatattatgcagcaaacacttttacctactgaaccatttc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ggaattcaaacccatatccccatattatgcagcaaacacttttacctactgaaccatttc 795
Query: 64 cccatccatcccctactgctacctctccttcgctaacagtttgaccgctttaaatactta 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cccacccatcccctactgctacctctccttcgctaacagtttgaccgctttaaatactta 735
Query: 124 cctgtggagctctcttatagacaggagcccttgtaagctgccagtgataatgtgttctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cctgtggagctctcttatagacaggagcccttgtaagctgccagtgataatgtgttctcc 675
Query: 184 aattatgcacatgtctgatatttgttcactcaggacttgagaccccagatactttccatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aattatgcacatgtctgatatttgttcactcaggacttgagaccccagatactttccatt 615
Query: 244 tatagaaaacaaatgtaacaggttcttatcctataaagaattaggaaacattaagaatct 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tatagaaaacaaatgtaataggttcttatcctataaagaattaggaaacattaagaatct 555
Query: 304 tgaataaaagctgagtttttatatcgtcagttaaaactgtaacataattagtttagaata 363
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 554 cgaataaaagctgagtttttatattgtcagttaaaactgtaacataattagttt--aata 497
Query: 364 aaaacatggctatatttaaagaaaaagtatgacatatcagatggacttaaagtcatattg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaacatggctatatttaaagaaaaagtatgacatatcagatggacttaaagtcatattg 437
Query: 424 ctaaaaagacaagtaatagttaaattaaaatgttaaaatattttccagtctaaaaatatt 483
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 436 ctaaaaagacaagtaatagttaaataaaaatgttaaaatattttccagtctaaagatatt 377
Query: 484 tcacagtcctaaaaaagatgctcttgatatttaaaagagttactactataaggaaatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcacagtcctaaaaaagatgctcttgatatttaaaagagttactactataaggaaatgaa 317
Query: 544 tacataaggtttaagtttatttctatactgtcttacccacaaaagaacttatgtttgcta 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 316 tacataaggtttaagtttatttctatactgtcttagccacaaaagaacttatgtttgcta 257
Query: 604 tcactgctacttaaagttcatgacatcccttataatcaaagcttagaattttt 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcactgctacttaaagttcatgacatcccttataatcaaagcttagaattttt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1065
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1055
Effective search space: 693135
Effective search space used: 693135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_f19.g1 MSMg01no181_f19.g1 CHROMAT_FILE:
MSMg01no181_f19.g1 PHD_FILE: MSMg01no181_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:49 2005
(660 letters)
>mm_chr1_60336932_60337991
Length = 1060
Score = 1189 bits (615), Expect = 0.0
Identities = 648/659 (98%)
Strand = Plus / Plus
Query: 1 ttttctgttgttggaaataagccttgtttaataacatacagtttcttttgctcttgaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctgttgttggaaataagccttgtttaataacatacagtttcttttgctcttgaata 260
Query: 61 aaatttattcattaactactaatgtctcaggcttacacctaagatcaattgagctttcta 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 261 taatttattcattaactactaatgtctcagacttacacctaagatcaattgagctttcca 320
Query: 121 taaatagaaatacatctcaaaatgaagatttcacttaatggattggagcatacagatttc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatagaaatatatctcaaaatgaagatttcacttaatggattggagcatacagatttc 380
Query: 181 atttttcactgttcactataattctaaccctttgcttttgacccacagtgaattcaagtt 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 atttttcactgttcactataattctaaccctttgcttttgatccacagtgaattcaagtt 440
Query: 241 gattgttactctgtcaagaaaactctgatgtataacttaactatgtacagtcactagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gattgttactctgtcaagaaaactctgatgtataacttaactatgtacagtcactaggag 500
Query: 301 actaaatataattttgtgattaatagaaagaaatgattttttaatcccacttcattttgt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 actaaatataattttgtgattaatagaaagaaatgattttctaatcccacttcattttgt 560
Query: 361 tctctaaaggtggtttttcttcagatagtcagtctaaaatccataactgaattagcttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctaaaggtggtttttcttcagatagtcagtctaaaatccataactgaattagcttag 620
Query: 421 tatagaatgctttagcatgttaaagtactgccttttagtacacatagtgtgaaaatatca 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 catagaatgctttagcatgttaaagtactgccttttagtacatatagtgtgaaaatatca 680
Query: 481 aaggtagggcaggccttttagaatttaaaatttcaagttaaataaaacatttaattaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggtagggcaggccttttagaatttaaaatttcaagttaaataaaacatttaattaaag 740
Query: 541 aagagtcttaatttttcctcttcctgttacctaggactaaatccagagtgatgcactgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagagtcttaatttttcctcttcctgttacctaggactaaatccagagtgatgcactgaa 800
Query: 601 agtgctctacactagcctgtatccccggcttaagtcgtcccaggcgtcctccatcgtgc 659
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 agtgctctacactagcctgcatccccggcttaagtcgtcccaggtgtcctccatcgtgc 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
