BAC Information

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BAC

Clone NameMSMg01-181J10
Chromosome1 (Build37)
Map Location 170,812,887 - 170,813,223
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181J10.T7 (MSMg01no181_j10.b1)MSMg01-181J10.TJ (MSMg01no181_j10.g1)
ACCAG374722AG374723
length736746
length of high quality
(start - end)
289 (78 - 366)339 (71 - 409)
definitionCHROMAT_FILE: MSMg01no181_j10.b1 PHD_FILE: MSMg01no181_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:05 2005CHROMAT_FILE: MSMg01no181_j10.g1 PHD_FILE: MSMg01no181_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTCATGCATTGTTAGCATA
AATTGTCTCATGTACATTGAAACAGGCCACTTTTTTACACTGAAAGAGAA
TTGAGTATTTTGAATGACTATACAACCTGCCAGCCAAGAGTTCAGCTTTC
TCTGTGTAGCTACCTTTGTCTGGAAATGCATAGTGTAATTATTTGAACAT
TCCCTTTGTGCTTTTCTTTTATTATTTTATGAAAATGACTGAGAAACAGG
AAAATGAATGTGCTCACACTGGAGGTAGTAAGCTCGGGCACCATAAATTC
ACTGGAGTTGAAAATTTATTTTTCTCCCTCCCCCTTCTAGAATTGACGAA
TCCTTGTTGAGGTCTTAACACCACCAAGTGAATAAACAGGCACTTTGTTT
TTGACTCCCATACTTTATAGGAAACACTGTATACACGGCTATTATAATTG
TATCTAACTGATATATCAATTTTACGACTTGTCTCCATTTCACTTAGCCT
TCTCACCACTTATTTTTCTTATTTTTTATACCCCACCTACTACATCCCTC
CCCATTATTTCCGCCCCCCCCCCCCCCCATTTATTTTTTTATATAAATCG
TACCCGCCAGTATTATTTCCTTTTTTTACCCCCACACCCCCCACCCCCCT
ACCCATCCTTTAATCTTTTTTCTCCAACTTTTTATA
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTCTGTATACCAGAACCTGTGATTTAGGCTCTCAGAATGTTCC
TGGGCTGTACTCAGTGACATCTGGCCACCATTGTGGAAGTATCTTAAACA
TAAAGAAAAGAAGATGCTAGAACACTGGNGAGAAAACCAATAATAGATAT
ACAGGCCCTAAAACTAAAGATATTGCCATCCTCAGACATCGCCAAATAAA
TAATATGTATGCAATGTTTAAAAGGAATTTATAAAAGGGGGAACTTAGAA
AAATCAGAAATGAGAGACTACAAACCTTTAAAATGTACCATCTATATTTT
TGGGAAGTAAAAATATAATTTTAAATTATCATTACGATAGCTGTCTCCTG
AGAGGCTCGGCCAGTGTCTGCCCCATAGAGAAGAGTAGGCTCACAATCAC
CTATTGGATGGAACACAGGGCCACCAATGTAGGAGCTACCTTATAGGATG
ACCAACAATATGAACTAACCCGTACTCCCAGAGTTCCTTGGTACTATACC
ACCTTTTACAGAAACCACATGGTGGGACTGGCGCGTTCTTATCTGCTTTA
TGTAACATAGTAATGTTCTATTCGTTCCTTTATGATATGGACAGGTCCAT
ATGTTTCTGCGCACGCCTTCACCGCCCTAGTTATTAGGGTTAACCCCACC
TATTTAATATTTGTTTTTCCTTCTATTTTTCTTCTACTTTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_j10.g1 MSMg01no181_j10.g1 CHROMAT_FILE:
MSMg01no181_j10.g1 PHD_FILE: MSMg01no181_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:05 2005
         (339 letters)



>mm_chr1_170812687_170813423
          Length = 737

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%), Gaps = 2/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctgtgatttaggctctcagaatgttcctgggctgtactcagtgacatctggccacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |
Sbjct: 201 aacctgtgatttaggctctcagaatgttcctgggctgtactcagtgacatctgggaac-a 259

                                                                       
Query: 61  ttgtggaagtatcttaaacataaagaaaagaagatgctagaacactggngagaaaaccaa 120
           ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 260 ttgtggaagtatcttaaacataaagaaaagaagatgcaagaacactgg-gagaaaaccaa 318

                                                                       
Query: 121 taatagatatacaggccctaaaactaaagatattgccatcctcagacatcgccaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taatagatatacaggccctaaaactaaagatattgccatcctcagacatcgccaaataaa 378

                                                                       
Query: 181 taatatgtatgcaatgtttaaaaggaatttataaaagggggaacttagaaaaatcagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taatatgtatgcaatgtttaaaaggaatttataaaagggggaacttagaaaaatcagaaa 438

                                                                       
Query: 241 tgagagactacaaacctttaaaatgtaccatctatatttttgggaagtaaaaatataatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgagagactacaaacctttaaaatgtaccatctatatttttgggaagtaaaaatataatt 498

                                                  
Query: 301 ttaaattatcattacgatagctgtctcctgagaggctcg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttaaattatcattacgatagctgtctcctgagaggctcg 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 737
Length adjustment: 9
Effective length of query: 330
Effective length of database: 728
Effective search space:   240240
Effective search space used:   240240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)