BAC Information

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BAC

Clone NameMSMg01-181K21
Chromosome1 (Build37)
Map Location 68,809,234 - 68,956,572
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181K21.T7 (MSMg01no181_k21.b1)MSMg01-181K21.TJ (MSMg01no181_k21.g1)
ACCAG374784AG374785
length737734
length of high quality
(start - end)		594 (42 - 635)418 (73 - 490)
definitionCHROMAT_FILE: MSMg01no181_k21.b1 PHD_FILE: MSMg01no181_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:12 2005CHROMAT_FILE: MSMg01no181_k21.g1 PHD_FILE: MSMg01no181_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,809,234 - 68,809,823)(68,956,155 - 68,956,572)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACACAAATTATCCTCATTTACAAGAACTGCTTGCCTAATTATCATGCAC
TAGAATAACAATTACGCATATCATTAAATTCCTGTGAGATAATCTTCAGT
ATAAGTTTTATTTGATTAGGCCACTAAAGTCTGTTCATGCATGCTTAGCC
TTCATAGTGAGTTGCTCACGACGAATGGTTTTAAAACATAATGATAGCGA
TATTGGCTGCAACTCTAAAACACCGCCCCCCGTCCCCCCAAAAATATATT
GCCCTGGTTATCCACCTTGTGAAAGGTTAGAGCAATCAAATGTGGGCTGA
ATACAATCATACTTTCATATATCAAATATAAATAAAATGGAAAACCATAG
TTAGTGTTTTAGGCTTCCTAATTTGCACATTCTAACTAAGAAGATATCTG
GGCTGATAGTGTAAAGCATACATGCCAATTGTAATACCTATCATACATCT
CCATTCAGAAGTAAAAACAAAAATCAAAACAAAAAAGATTATGGCAATTT
GAAATAAAACTTATTTCAAAATGAGCCTCTGTTCTTGAGCCCCCTCATCT
GGTGAATAACCACCAAGATCAGATAGCTTCACCGGGCAGAGCCCGAATTA
TTTCTGCTTATACCGTTCTCACTGCACCACCAGCAAATCCTTCAATTCAT
TGTTATTTAATATCCCAAAGAGCTTCTAAGGCTTCAG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACTCTCTCCCACTCTCTAGTTCTGAAC
TATGATGCCCATTTCCTCTACAGCATCATTTAATATGTGATATGAATATT
GAACAGGAAGTGTGGATGGAATGTATTGAGAATATGCATTGTGAAAGGGA
CTCAAAAATAGTGCTATAGAAAGATCATCCAAAACCTGTTGATCTGCCAA
TACAAGACAGTGATCTACTAAGCGGAGGTAAGCCCAGATGTTTGTGTAAA
ATCTGTGTGGTTTGCTCAATATAGAGCCTGCTCTCTGAAGAGTTATTAGA
GAGCCTAAGATGAATGTTTTAATAATTAAAAGTATTCATATTTATATTCC
CTTTTGTCTATTTCCCCCCACCTTTTTCTTTTACTCCATTCTCATCTCTT
TATGACCTCATCCCATTATGATTCTGAACTATTGTGGGAGTGCCCTATAA
TAATTTTCAACCCTTCACAGTATACCTTAAGGTTTTGATGACCCCCTTTC
TACCCTATGCTATCCCTTTGAAATATTACTTTTAACACACATTTTCCGCT
TTACTCTGCCCTATATATCCTATGTCATGCAGATACTGCTCTACAAAATT
AATCTCCTGACTCCTGCATGCTCTTATTCCGCTCTAGAAAAGTATCCTAT
GTACCCCAAACTATTTTTGAGTTCCACCTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_k21.b1 MSMg01no181_k21.b1 CHROMAT_FILE:
MSMg01no181_k21.b1 PHD_FILE: MSMg01no181_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:12 2005
         (594 letters)



>mm_chr1_68809030_68810023
          Length = 994

 Score = 1133 bits (586), Expect = 0.0
 Identities = 589/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacacaaattatcctcatttacaagaactgcttgcctaattatcatgcactagaa 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacaaattatcatcatttacaagaactgcttgcctaattatcatgcactagaa 264

                                                                       
Query: 65  taacaattacgcatatcattaaattcctgtgagataatcttcagtataagttttatttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taacaattacgcatatcattaaattcctgtgagataatcttcagtataagttttatttga 324

                                                                       
Query: 125 ttaggccactaaagtctgttcatgcatgcttagccttcatagtgagttgctcacgacgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaggccactaaagtctgttcatgcatgcttagccttcatagtgagttgctcacgacgaa 384

                                                                       
Query: 185 tggttttaaaacataatgatagcgatattggctgcaactctaaaacaccgccccccgtcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggttttaaaacataatgatagcgatattggctgcaactctaaaacaccgccccccgtcc 444

                                                                       
Query: 245 ccccaaaaatatattgccctggttatccaccttgtgaaaggttagagcaatcaaatgtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccccaaaaatatattgccctggttatccaccttgtgaaaggttagagcaatcaaatgtgg 504

                                                                       
Query: 305 gctgaatacaatcatactttcatatatcaaatataaataaaatggaaaaccatagttagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgaatacaatcatactttcatatatcaaatataaataaaatggaaaaccatagttagt 564

                                                                       
Query: 365 gttttaggcttcctaatttgcacattctaactaagaagatatctgggctgatagtgtaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttttaggcttcctaatttgcacattctaactaagaagatatctgggctgatagtgtaaa 624

                                                                       
Query: 425 gcatacatgccaattgtaatacctatcatacatctccattcagaagtaaaaacaaaaatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcatacatgccaattgtaatacctatcatacatctccattcagaagtaaaaacaaaaatc 684

                                                                       
Query: 485 aaaacaaaaaagattatggcaatttgaaataaaacttatttcaaaatgagcctctgttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaacaaaaaagattatggcaatttgaaataaaacttatttcaaaatgagcctctgttct 744

                                                             
Query: 545 tgagccccctcatctggtgaataaccaccaagatcagatagcttcaccgg 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgagccccctcatctggtgaataaccaccaagatcagatagcttcaccgg 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no181_k21.g1 MSMg01no181_k21.g1 CHROMAT_FILE:
MSMg01no181_k21.g1 PHD_FILE: MSMg01no181_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:12 2005
         (418 letters)



>mm_chr1_68955955_68956772
          Length = 818

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactctctcccactctctagttctgaactatgatgcccatttcctctacagcatcattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tactctctcccactctctagttctgaactatgatgcccatttcctctacagcatcattta 559

                                                                       
Query: 61  atatgtgatatgaatattgaacaggaagtgtggatggaatgtattgagaatatgcattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atatgtgatatgaatattgaacaggaagtgtggatggaatgtattgagaatatgcattgt 499

                                                                       
Query: 121 gaaagggactcaaaaatagtgctatagaaagatcatccaaaacctgttgatctgccaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaagggactcaaaaatagtgctatagaaagatcatccaaaacctgttgatctgccaata 439

                                                                       
Query: 181 caagacagtgatctactaagcggaggtaagcccagatgtttgtgtaaaatctgtgtggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caagacagtgatctactaagcggaggtaagcccagatgtttgtgtaaaatctgtgtggtt 379

                                                                       
Query: 241 tgctcaatatagagcctgctctctgaagagttattagagagcctaagatgaatgttttaa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgctcaatagagagcctgctctctgaagagttattagagagcctaagatgaatgttttaa 319

                                                                       
Query: 301 taattaaaagtattcatatttatattcccttttgtctatttccccccacctttttctttt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 taattaaaagtattcatatttatattcccttttgtctatttccccctacctttttctttt 259

                                                                     
Query: 361 actccattctcatctctttatgacctcatcccattatgattctgaactattgtgggag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actccattctcatctctttatgacctcatcccattatgattctgaactattgtgggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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