BAC Information

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BAC

Clone NameMSMg01-182B09
Chromosome1 (Build37)
Map Location 84,415,933 - 84,416,214
singlet/doubletsinglet
Overlap geneDner
Upstream gene5033414K04Rik, LOC100039638
Downstream geneTrip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182B09.T7 (MSMg01no182_b09.b1)MSMg01-182B09.TJ (MSMg01no182_b09.g1)
ACCAG375066AG375067
length806729
length of high quality
(start - end)
---282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no182_b09.b1 PHD_FILE: MSMg01no182_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:44 2005CHROMAT_FILE: MSMg01no182_b09.g1 PHD_FILE: MSMg01no182_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTGTATTCATCTCTGTTTCCTGTGAGTTTGTTTTTTTTTTTTTTAAN
NAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGATTCGTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTACGATATCGAGGT
ATAAGACCGATAATCTGACTGAACCACCCTATGCAATCGTGGATGCAAAC
TAGAACTTGGACCGACAATACGAGCGTTTCCTCGCCCGCAGACTGAAGGT
CATATTGACGATTTAGTTGTTACTGTTTGTCTAGATCTATGTGTCCCCCC
TAGATTTTGTATTGGTGCTTTGTTCACATCCAACTTAACAAAGCGACCGT
TCTCCGCTTTACGCTGAATCCAGACTTTTGTTCCCCGTTGAAATGAACCC
ACTGCAAACATCGTTTCCTTTTCTGGATTAGTTTATCTTTTTTATCCCTT
TTCCCCCCTTCTTTTTTTTCCCCCCCCCCAACTTATTTTCCTCCTCTTTA
TTTCTN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAACAAACACAGGCAGAGAGCGAATT
TTGAAAGCACTCACATGGTCCTCATTGTTTGGACAGGGCCAGACAAGAGT
GGCCTGGTTTCACTGCAAATTGGCAGTAACACGTGTTTTTGAAAGTTGGA
AACAGCATAATGCCTCATCCCAGAGAATGGTGTCTTCTTGTCTTATAAAA
TAAACACCTGTTTTTCAAAACAGAAGCATAAAAGCTGTCTTTATAAAAAT
TGTTGGGTTTCTTTTCTCCATTCCTATTATTTCCCAGTAATTAAAATATT
AAGTACTATTTGAAATTGTATGACATATACATTTATGTTTTTAAACAAAC
AAGTAAACAATATCCCCCCCAGCCCATGTTTCCATAAGAATTTCATCTAA
ACCCTGGTGTATTCATTTCTCTTTGGACTGGGGAGGATGATGCAGCCCCC
CCCCCATATTTTTTACTCCCCTTCCCTCCTTTTTAACAATTTATTCCTTA
CTTTCTCCCTTCCTCTTTTCTCTTATTTTTATTCTCCTTTTTTTTTTTTT
TCCCTATCCTCCTCCCCCCTCTTTTTCCCTTTCTCTTTCTCCCCTCCTTT
CTTCATCAATTTACTCTCTTCTCTTACCCTTTTCCCCATTTTCCCTATTC
CCCTTCCCCTTTTTACACACTCACCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_b09.g1 MSMg01no182_b09.g1 CHROMAT_FILE:
MSMg01no182_b09.g1 PHD_FILE: MSMg01no182_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:44 2005
         (282 letters)



>mm_chr1_84415733_84416414
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacaaacacaggcagagagcgaattttgaaagcactcacatggtcctcattgtttgga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 482 agaacaaacacaggcagagagcgaattttgaaagcactcacatggttctcattgtttgga 423

                                                                       
Query: 61  cagggccagacaagagtggcctggtttcactgcaaattggcagtaacacgtgtttttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cagggccagacaagagtggcctggtttcactgcaaattggcagtaacacgtgtttttgaa 363

                                                                       
Query: 121 agttggaaacagcataatgcctcatcccagagaatggtgtcttcttgtcttataaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agttggaaacagcataatgcctcatcccagagaatggtgtcttcttgtcttataaaataa 303

                                                                       
Query: 181 acacctgtttttcaaaacagaagcataaaagctgtctttataaaaattgttgggtttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acacctgtttttcaaaacagaagcataaaagctgtctttataaaaattgttgggtttctt 243

                                                     
Query: 241 ttctccattcctattatttcccagtaattaaaatattaagta 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttctccattcctattatttcccagtaattaaaatattaagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)