CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTCTATGTTCCTGTCTCTCATACAGCACATATCCTTTATTAAAA
TGCTTGTATTGATTCTGGCCTTGTAATTACTTCCATCTGCATTCAATTCC
TGACGCATCAACAACCAGACATTACTTGGTTGAGTGTTTCTCGAATAAAT
TCAGATACAGATTCACTTTAAATACAGATTGTTTGTGATTACAATCCAAC
TCTATCATTTTGAAAGTGGAATGATAAAGAGCTAAGTGTGTGCTTGGTGT
TTGTTCAGCTTGATCTTTAATAGTTTAGCAAGATATTTGGACAGGTATTC
CTCTCTAAGTGTACCCAACAGGCCTATAATTGTAAGGAAAAGCCAAGCAT
CAACTCAATCTAATCAAACTCTCCTTATATAAAAATACTACAAAGTTTAA
AATGCAAAAGACCTCCTCCATAGATGACCTACAATGGTAGAAAGGTCATT
ATATAAAAATTAATTGCTTTCTTCAGAGTGCTAATAAAAATATGTTTGCA
CTGTTTGCACTTTGCTCTTTTGCTTGTCTTCAAACAACTTCCCCTGATTT
TCTGAAGGTTTTTCTTTATTTTTTTCTAAGCCAGCAACAATTAAAATAAA
ATTTCCAAAGGAGTAAAAAGCAAAGAGGAAAAGCTACAAGAATCGGATTT
GATTTTCCTACCCT

ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATAGAGACACTTGTTGAACGGCGTC
TTTCCAGAGGTCAGGAGTCAGCGCAGCTGAAGATCATGGAGATGACATCA
AAGGTAGCCTTGGCAAAGTTGCCCAGGATGCAAGTGTACCCCCTGCCTGG
AGTGCAGGAGTCATCTATACTGCCATCACCAAAAGCTTCTTCAGCACAGG
AGCAGAGTCAATGCCAGTGCCTCTGCACCTTGCACATCTTAATGATGGAT
TGTGGCGTACACAAAGACTAAGGACTATTTTATCTTTTTGAAATGCCAAC
CTTTTATTATTTTTAAATCTTCTTCTCTATCTCTGATAACTTCTACTATG
GTGCCGGTTGTGTATGCTTACCCTGGAATACAACTGAGCTGTCTCCCTTG
CTATTCCTGTCAGAGAGCTTTTACCTGTATTCATGAATTTTAATCATTAT
GTGACTTTTTACTCTTATGAGAATTCTTATACCAGAATATACGATATGGG
TATGCTAGCCTTGACAACCTTGATCATTAATTATGCACAATTTATGTCCC
TGAGATTTAAAGTGTGATTGAATCATGCTTTAATAGGCACCATTTCTGGG
TTGTTCTATATGAATTGTCTTTGTCTGCTACTCCAAATTATTTCTATCCC
TCTATAAACCCCCGCTATTCTTTT

Query= MSMg01no182_c02.b1 MSMg01no182_c02.b1 CHROMAT_FILE:
MSMg01no182_c02.b1 PHD_FILE: MSMg01no182_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:47 2005
         (671 letters)



>mm_chr1_11738690_11739760
          Length = 1071

 Score = 1197 bits (619), Expect = 0.0
 Identities = 655/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctctatgttcctgtctctcatacagcacatatcctttattaaaatgcttgt 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaattcactctctatgttcttgtctctcatacagcacatatcctttattaaaatgcttgt 812

                                                                       
Query: 65  attgattctggccttgtaattacttccatctgcattcaattcctgacgcatcaacaacca 124
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 811 attgattctggtcttgtaattacttccatctgcattcaattcctgacgcatcaagaacca 752

                                                                       
Query: 125 gacattacttggttgagtgtttctcgaataaattcagatacagattcactttaaatacag 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 751 gacattacttggttgagtgtttctcgaataaattcagatacaaattcactttaaatacag 692

                                                                       
Query: 185 attgtttgtgattacaatccaactctatcattttgaaagtggaatgataaagagctaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 attgtttgtgattacaatccaactctatcattttgaaagtggaatgataaagagctaagt 632

                                                                       
Query: 245 gtgtgcttggtgtttgttcagcttgatctttaatagtttagcaagatatttggacaggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtgtgcttggtgtttgttcagcttgatctttaatagtttagcaagatatttggacaggta 572

                                                                       
Query: 305 ttcctctctaagtgtacccaacaggcctataattgtaaggaaaagccaagcatcaactca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttcctctctaagtgtacccaacaggcctataattgtaaggaaaagccaagcatcaactca 512

                                                                       
Query: 365 atctaatcaaactctccttatataaaaatactacaaagtttaaaatgcaaaagacctcct 424
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |
Sbjct: 511 atctaatcaaactttccttatataaaaatactacaaagtttaaaatgcaaaagatctatt 452

                                                                       
Query: 425 ccatagatgacctacaatggtagaaaggtcattatataaaaattaattgctttcttcaga 484
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccttagatgacctacaatagtagaaaggtcattatataaaaattaattgctttcttcaga 392

                                                                       
Query: 485 gtgctaataaaaatatgtttgcactgtttgcactttgctcttttgcttgtcttcaaacaa 544
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtgctaataaaaatatgtttgcagtgtttgcactttgctcttttgcttgtcttcaaacaa 332

                                                                       
Query: 545 cttcccctgattttctgaaggtttttctttatttttttctaagccagcaacaattaaaat 604
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 331 cttcccctgattttctgaaggtttttcattatttttttctaagccagcaacaattaaaat 272

                                                                       
Query: 605 aaaatttccaaaggagtaaaaagcaaagaggaaaagctacaagaatcggatttgattttc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaatttccaaaggagtaaaaagcaaagaggaaaagctacaagaatcggatttgattttc 212

                  
Query: 665 ctaccct 671
           |||||||
Sbjct: 211 ctaccct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)