BAC Information

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BAC

Clone NameMSMg01-182D23
Chromosome1 (Build37)
Map Location 9,579,172 - 9,579,688
singlet/doubletsinglet
Overlap genenone
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542
Downstream gene3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182D23.T7 (MSMg01no182_d23.b1)MSMg01-182D23.TJ (MSMg01no182_d23.g1)
ACCAG375185AG375186
length723716
length of high quality
(start - end)
518 (70 - 587)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no182_d23.b1 PHD_FILE: MSMg01no182_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:56 2005CHROMAT_FILE: MSMg01no182_d23.g1 PHD_FILE: MSMg01no182_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATGAGCTACCCGTCTTTCCCTCCAATGTTGAAGCTACAGGTAC
ATGTGTCATGCCTGGTTTCTATATGGGTGGTATGGATGCAAACTCAGATA
TCACATGCTTGTATGGCATGCACTCTGACCTACTGAGCCATCTCTCCAAC
CCAAGATCACTTTTTTGATATGGTTTTCTCCTGGCTTCTGTTTAAATTTT
TAATTTTTTTATTCACATCCTCTCTTCCCTGATTTTCTCTTTCTTTTTTT
CCATTAATCACTATCTGATAGACTTCACAGGTTGTTTATCTTATTATTTG
TCTCACTCAATAGCATATAAAATCCACAACTTACATCATATCATCCCCGA
GACCTGATTCATAACACATGCCCAATAAATATCTGTTGAAAAATATGAAT
GAAAAGAACATGAATGAATTTCAAAATATTATGCTAGGTAAAAGAACCTA
CATAAAAACAGTTCCATTCATGGGAGTCTAGTTCTCTCCAGAGGTAAACC
CTTCGTGACAGAATATAGACTCCTGCTTGCTAGAGGCTGTGGTGAGAAAG
GCTGACAAAAATTTTGAGTATGGGATTTCCTTTTCAGGTGATGTATGAGA
TACAGTTTCATGGTTCTAATAAAATACTTGACCAAATCAATTTACGGGAT
GAATAGGTTATCCTGTTTTATGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTAGAGATTAAGGTTAGGTCTGTATAGTTG
CAATGCTGTGGTTTTTCTCTTTGGTCCAGTGGCTTCCATTTTTGTTTGTT
TGCTTGTTTGTTTATTTAATGCGTATGGGTATTTTGCCTGCATGTGTGTC
TGCATCGTGTGTGCAGTGCTCGTGGAGGTTAGAAGAGAGAGTAAGATCCT
TGGAGACTGGAGGTGTGGATGGTTCTGAGCTCACATGTGGGTGCTGGGAA
CTGAACGTTGAATCCTTGTAACAGCAGCGGATGCTCTTGTCCACAGAGCC
ATCTGTTTTTTCTGATGCACCTCTCCACCAGTAGAAACCATTTATTGAGT
GATTTCTTTAAAACGCCCACAATATTAATAAGAATATTATTGCTATATGC
TATATTTAATGTAAAATATAATTTAAAATTCCTCATGTGCACCAGCCTCA
TTCTGCACATATGACTGCTGGTTCCCATACTCATTTGCTAAAGATAAAGA
ATACTTTCATATTTCAGAAAGTTCTATTGAATAGTGCCATACGTGCTACA
AGTTATCTTTCCTTCATGAGTCTTCAAGATCTCATTATTATAAGAGCAGG
ATACGAGGCTTCCAAGATAACTAAAATGCCTTGGTCATATTTCTAACAAG
AGAAAGAAACTACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_d23.b1 MSMg01no182_d23.b1 CHROMAT_FILE:
MSMg01no182_d23.b1 PHD_FILE: MSMg01no182_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:56 2005
         (518 letters)



>mm_chr1_9578971_9579888
          Length = 918

 Score =  932 bits (482), Expect = 0.0
 Identities = 509/518 (98%), Gaps = 1/518 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttccctccaatgttgaagctacaggtacatgtgtcatgcctggtttctatatgggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctttccctccaatgttgaagctacaggtacatgtgtcatgcctggtttctatatgggtg 261

                                                                       
Query: 61  gtatggatgcaaactcagatatcacatgcttgtatggcatgcactctgacctactgagcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtatggatgcaaactcag-tatcacatgcttgtatggcatgcactctgacctactgagcc 320

                                                                       
Query: 121 atctctccaacccaagatcacttttttgatatggttttctcctggcttctgtttaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctccaacccaagatcacttttttgatatggttttctcctggcttctgtttaaattt 380

                                                                       
Query: 181 ttaatttttttattcacatcctctcttccctgattttctctttctttttttccattaatc 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ttaatttttttattcacatcctctcttccctgtttttctctttctttttttccattaatc 440

                                                                       
Query: 241 actatctgatagacttcacaggttgtttatcttattatttgtctcactcaatagcatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actatctgatagacttcacaggttgtttatcttattatttgtctcactcaatagcatata 500

                                                                       
Query: 301 aaatccacaacttacatcatatcatccccgagacctgattcataacacatgcccaataaa 360
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 501 aaatccacaacttacatcatatcatccccaagacctgattcataacacatgctcaataaa 560

                                                                       
Query: 361 tatctgttgaaaaatatgaatgaaaagaacatgaatgaatttcaaaatattatgctaggt 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctgttgaaaaatatgaatgaaaggaacatgaatgaatttcaaaatattatgctaggt 620

                                                                       
Query: 421 aaaagaacctacataaaaacagttccattcatgggagtctagttctctccagaggtaaac 480
           ||||||| ||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 aaaagaagctagacaaaaacagttccattcgtgggagtctagttctctccagaggtaaac 680

                                                 
Query: 481 ccttcgtgacagaatatagactcctgcttgctagaggc 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttcgtgacagaatatagactcctgcttgctagaggc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)