BAC Information

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BAC

Clone NameMSMg01-182G05
Chromosome1 (Build37)
Map Location 175,934,433 - 175,934,552
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b
Downstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182G05.T7 (MSMg01no182_g05.b1)MSMg01-182G05.TJ (MSMg01no182_g05.g1)
ACCAG375285AG375286
length769862
length of high quality
(start - end)
120 (70 - 189)89 (76 - 164)
definitionCHROMAT_FILE: MSMg01no182_g05.b1 PHD_FILE: MSMg01no182_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:07 2005CHROMAT_FILE: MSMg01no182_g05.g1 PHD_FILE: MSMg01no182_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCGGA
ATTCACTACAGTCTCCCAGCCATTTCTCATCAGCTATAATAATTTTCTGT
TTCCTTTATGAAATCTTCATAATATAACAACAATGGTCATAATCTTGAAA
ACTTCCCACTAATTTTTTTCTTTAATGTGTTCCTTCGTTCGCAAGGTGTA
TATTTGGAAACACTCACTGCATTGGTACCTTATGTTGCATTGTACCATGA
CATCATAACTCTGCATCTAGCATATCACAGTGGAATTTGGAACATGATAT
CTTTAGGCATGTCTACTTATTCTTATTCATAAGGAATGATAGCAATAAAA
TTTAAAACATGCATCACCATAAGAAAGTGTAACGTGATTCAATAACTATT
TTGCTGATTGTTGCACANCCCCAAATGAGTGCTTCATAATGATAGTTATG
TTAGTTTTCTCTGAAGTACTTACTTATTTTCATGATACATCTGACTTGAT
TATATATTTGCTTTTTTTAACCCCCACTGATAATATGATATAGCTCTGAC
ACATCTTACGACTTATTTTATATTATAATATTCTCCTCCCCCAATTTTCC
CCCGTTTATCCCCTCACTTTAATTTTTATTTTTTCTTCCATTTTGTTACC
CTTTTCCCCTTTTTTCCCCCTAATTATTATGTTTTTAAACCCCACCTATT
CTCCTTTAGTACACCTCCCAAATTTTCCCCAATTCACACTCTTAATCCTT
CTATCTTTTCTATAACCCC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGTTCAACAAGCTGAAATGTT
CAAGTGAGGACAATTCAGTCTCACTTGGGACAGAGAAGGAAGCGATCATA
AGTGGGGAGGGAGGGAGGGACTTTATAGTTCTTTCTTCTTTTTCCCTTTT
TCTTTTTTCTCTCCCTCTTTTATTTTTTTTCTTTTTTTTTCCTTCTCTAT
CCTCCCCCCTTTTTTTTTTTTTCCTTCTCTTTTTCTTCTCCGTCTTTCTC
TTTTTTGTTTTTTTTTTTTTTTTTCTTTTCTTTCCCTTTTTCCCCTCTCC
CCTTTTTCCTTTTTTTTTTCCCCTTCTCTCCCCTCCCCCCTTTCTTTTTT
TTTCCTTCTTTTTTTTTTTTTTTCCCCCACCTTTCTTTTATTTCCTCTTT
TTCTTCTTTCTCTTTTTTTTTTTTTCTCCTCCTCCTCTTCTTCCCTCCTC
CCTCCTCCGTTTTTTTTTTGTCCTTTTTTGTTTCTTTTTTTTTCTTTCCC
CTTTTTCTTTCTTCCTGCTTTGTTCTTTTTTCTTCCTTCTTTTCTTCTTT
TTCTTTCCTCCTTTCTTTCTTTGTCTTTTTTTCTCTCTTTCCTTTTCTTT
CTTTTTTTCTCTCCCCTGTCTGTCCTCTTCTTCTTCCGTTTTTTTTTTCT
TTTTTTTCTTCTCCGTTCCTTTCTTCCCTTTCTTTCTTTTTTTTCTCTCC
TCTCTTTTTTTTTTCTTTTCTTGTTTTTGTTTCTCTCTCTCCTTCCCTTC
ACTTCTCCGTTCTTTCTTATCTCTTTTCTTTCTTTTTTCTTCCTTCTCTT
ATTCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_g05.b1 MSMg01no182_g05.b1 CHROMAT_FILE:
MSMg01no182_g05.b1 PHD_FILE: MSMg01no182_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:07 2005
         (120 letters)



>mm_chr1_175934233_175934752
          Length = 520

 Score =  232 bits (120), Expect = 5e-66
 Identities = 120/120 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatttctcatcagctataataattttctgtttcctttatgaaatcttcataatataaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccatttctcatcagctataataattttctgtttcctttatgaaatcttcataatataaca 261

                                                                       
Query: 61  acaatggtcataatcttgaaaacttcccactaatttttttctttaatgtgttccttcgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaatggtcataatcttgaaaacttcccactaatttttttctttaatgtgttccttcgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)