BAC Information

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BAC

Clone NameMSMg01-182G14
Chromosome1 (Build37)
Map Location 90,674,937 - 90,675,553
singlet/doubletsinglet
Overlap genenone
Upstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
Downstream geneLOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182G14.T7 (MSMg01no182_g14.b1)MSMg01-182G14.TJ (MSMg01no182_g14.g1)
ACCAG375301AG375302
length687704
length of high quality
(start - end)
636 (52 - 687)282 (81 - 362)
definitionCHROMAT_FILE: MSMg01no182_g14.b1 PHD_FILE: MSMg01no182_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:09 2005CHROMAT_FILE: MSMg01no182_g14.g1 PHD_FILE: MSMg01no182_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCTTCCCCAGACTTGGTCTGTCTTCATAGTCACAGTCT
CCCTGGGCAATTTACCTCCTCTCCTGCCCTTAATTAACATGCATTTGCTG
ATGGTGATTAAAGAGCCCTCTGGTCTAGAACTTTAACCTGAGCTCTGAAA
CACACGGAGTTCACATGGGCTGGGCCTCCAGCACTTGTGGACGACCAGGA
TGCTTGATTTTAAACAACAGCATCTCCTCTCTCCTCCACAAACCTGGTCC
TCACCTTTCCATACCCCAGTGAGAACTCTGGGTTACAGCCATAGTCCTCC
CCCAATTGTCACTGACATAGATCAGCCTCCTGGATACTCTGGGAGTATCT
ACATCCTCTCTCTCTCCACCTGGGCTCCAACCTCAGCCAAAGGCAGTCCC
TGTTCAAGGCTCTCTCCAAACCCAGTGCTGGAAGAGCCACGTGTGAAAAC
CTCAAGCTTAATGTTCCGCTTGATACAATGTGGCACTTTCATAAGTCTGC
AGAATTAGTTCAAGCCATTACCTCTGGGTTCACTGGCCCCCTCATTTGGA
CTGTTGCCCCTTGGGCTTTTCTTTTGCAAACTGTCAGCTCACTGGGATAC
CTAGTAACAGCAGGGCTGGCCTGCTTTCCCCGGCATC
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTGAGTCCATTGTTTC
TATAGCCTGATCTCTAAAGCGAAGGGCACAAGTGTCTCTTTAGACTGTCT
TCAACTCTTGGGGCTGGAGAGAGGGCTCGCTCAGTCATTAAAGGCAAATA
CAATTATCACAGAGGATATGAGTTCAGTTCCCAGCACCCATATTGGGCAG
TTCAAAACCGTTACCTGTAATTCCAGCTCCAGTGATCCAGCGCCCCCTTT
TGGCCTCTGTAAGCATCTGCTCTTATGTGCACATACCCACATACAGATAC
ACACATGGGTGATTACTTCCCCCCGCCCACTCCAGGAAGTCACCTGAGAG
GGAACAGATGACCTGGCGCCCATCTGAGGTAGGAGCAACAGTCAAACTCA
TGACCCAGCCGTGTCTCTGTCATAAGTCTTGGTCATTAACAGACCTGACT
GCCTGATCATGAGATCCGCTTCCTCCATTTTCCAAGCATTCCATACTCCA
TCATTCCAAGTGTGCTTGCACACTTCCAAGATCTGTGAGTCTTCATGCGG
CCCTGTAAGGATGTAGGAGGGTAGTCTGTTTCTCTCTGGTGACAAGCCCA
TTTTAATTTCAGAGTGGACCGTGTCACCTTCCCCCATCCTACCGAGTGAA
GACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_g14.b1 MSMg01no182_g14.b1 CHROMAT_FILE:
MSMg01no182_g14.b1 PHD_FILE: MSMg01no182_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:09 2005
         (636 letters)



>mm_chr1_90674720_90675755
          Length = 1036

 Score = 1178 bits (609), Expect = 0.0
 Identities = 615/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 18  ccagacttggtctgtcttcatagtcacagtctccctgggcaatttacctcctctcctgcc 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ccagacttggtctgtcttcatagtcacagtctccctgggcaatttacctcctctcctgcc 277

                                                                       
Query: 78  cttaattaacatgcatttgctgatggtgattaaagagccctctggtctagaactttaacc 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cttaattaacatgcatttgctgatggtgattaaagagccctctggtctagaactttaacc 337

                                                                       
Query: 138 tgagctctgaaacacacggagttcacatgggctgggcctccagcacttgtggacgaccag 197
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgagctctgaaacgcacggagttcacatgggctgggcctccagcacttgtggacgaccag 397

                                                                       
Query: 198 gatgcttgattttaaacaacagcatctcctctctcctccacaaacctggtcctcaccttt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gatgcttgattttaaacaacagcatctcctctctcctccacaaacctggtcctcaccttt 457

                                                                       
Query: 258 ccataccccagtgagaactctgggttacagccatagtcctcccccaattgtcactgacat 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccataccccagtgagaactctgggttacagccatagtcctcccccaattgtcactgacat 517

                                                                       
Query: 318 agatcagcctcctggatactctgggagtatctacatcctctctctctccacctgggctcc 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agatcagcctcctggatactctgggagtatctacatcctctctctctccacctgggctcc 577

                                                                       
Query: 378 aacctcagccaaaggcagtccctgttcaaggctctctccaaacccagtgctggaagagcc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aacctcagccaaaggcagtccctgttcaaggctctctccaaacccagtgctggaagagcc 637

                                                                       
Query: 438 acgtgtgaaaacctcaagcttaatgttccgcttgatacaatgtggcactttcataagtct 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acgtgtgaaaacctcaagcttaatgttccgcttgatacaatgtggcactttcataagtct 697

                                                                       
Query: 498 gcagaattagttcaagccattacctctgggttcactggccccctcatttggactgttgcc 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gcagaattagttcaagccattacctctgggttcactggccccctcatttggactgttgcc 757

                                                                       
Query: 558 ccttgggcttttcttttgcaaactgtcagctcactgggatacctagtaacagcagggctg 617
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 758 ccttgggcttttcttttgcaaactgtcagctcactgggatacctagaaacagcagggctg 817

                            
Query: 618 gcctgctttccccggca 634
           |||||||||||||||||
Sbjct: 818 gcctgctttccccggca 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)