CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGTGCTACACTACATGCTGTCTAAAGTAGATTTAATATTTCTTGT
CAAGAAAATTAAAATTTAAGGCATACTTTTATCTCTAAATTAAAATAATT
TTCCAAGATACTTCACAGTGTCACTTATGAAAAAAATTAAGAAAATTTAA
TATTAAGTTATATGAATATGCCACATTTAATATTTTCCAAGCATCATTTA
TATATAAAATGAAGCATCAAAAACATGTATTCACTCCATCTATAAGTTTA
ATTTTAGTTTATCCTTAGATTTATGTTTACAAATCTAGATGAAAATAAAT
AAACAATTGCAAGTTAGTAGGTTTTAAAATAATTTTAATTAAAATAACAA
TAAAAATGAAATACACCAATTAAAACCTTAGATCCTTGGACACATGAACC
AGACAGCTCCCCAGAGCAGAAAATATGTACTGCTGACTTTAATATGTAAA
TTAGTGTCAATGGAAAAGTTTCAGGGCTTTCTACAACCCTTAAAATGTAA
TAAAATGATTCATTAGAAAAGAATATTTTATGTAAATCATCATTTCTCCT
CACTTAATCAACTCCCACAAACAATTTAGAATACTTAGAGTATTCAGTTC
CTTTAAGTATTACTAACTTTAATTATTTCTAAATTGAAGGTTAAACCCAA
TTGACTTCATAACCAGGCAGTTTGAAATATTGGAAAG

NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCTTTCTCCACTTAC
TTTTTTTTTTAATTTATTTTTATTAGGTATTTTCTTCATTTACATTTCAA
ATGCTTTCCCAAATGTCCCCCATACCCTCCCCCCTACTCCCTTACCCACC
CACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGT
TTGCAAGACCAAGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCATCTT
CTGATACATATGCAGCTAGAGACAGGAGCTCTGTGGGTACTGTTTAGTTC
ACATTATTGTTCCACCTATAGGGTTGCAGACCCCTTTAGGTCCATGTATA
ATTTCTCTAGTTCACCCACTGAGGGCCCTGTGTTCCATCCAATAGCTGAC
TGTGAACATCTGCTTTTATGTGGAGGTCTGAGACCCACTTGAAATTGAGT
TTTGTACAAAGAAATAGGAATGGAATGATTTGCAGTCTTCTACATGATAA
CCACCAGTTGAGCCAGCACCATTTGTTGAATATGCTGTCTTTTTCTCACT
GGGTGGTGTTAGCTACTTTGTCAAAGATCAATAGATGATAGGTGTGTGGC
TTCATTTCAGGGTCTTCAATTCTATTCCATTGATCTACCTGTCN

Query= MSMg01no182_m17.b1 MSMg01no182_m17.b1 CHROMAT_FILE:
MSMg01no182_m17.b1 PHD_FILE: MSMg01no182_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:38 2005
         (694 letters)



>mm_chr1_27529132_27530225
          Length = 1094

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Minus

                                                                        
Query: 165  ttatatgaatatgccacatttaatattttccaagcatcatttatatataaaatgaagcat 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 ttatatgaatatgccacatttaatattttccaagcatcatttatatataaaatgaagcat 1035

                                                                        
Query: 225  caaaaacatgtattcactccatctataagtttaattttagtttatccttagatttatgtt 284
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1034 caaaaacatgtattcactccatctataagtttaattttagtttatccttatatttatgtt 975

                                                                        
Query: 285  tacaaatctagatgaaaataaataaacaattgcaagttagtaggttttaaaataatttta 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  tacaaatctagatgaaaataaataaacaattgcaagttagtaggttttaaaataatttta 915

                                                                        
Query: 345  attaaaataacaataaaaatgaaatacaccaattaaaaccttagatccttggacacatga 404
            |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 914  attaaaataacaataaaaatgaaataaaacaattaaaaccttagatccttggacacatga 855

                                                                        
Query: 405  accagacagctccccagagcagaaaatatgtactgctgactttaatatgtaaattagtgt 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  accagacagctccccagagcagaaaatatgtactgctgactttaatatgtaaattagtgt 795

                                                                        
Query: 465  caatggaaaagtttcagggctttctacaacccttaaaatgtaataaaatgattcattaga 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  caatggaaaagtttcagggctttctacaacccttaaaatgtaataaaatgattcattaga 735

                                                                        
Query: 525  aaagaatattttatgtaaatcatcatttctcctcacttaatcaactcccacaaacaattt 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  aaagaatattttatgtaaatcatcatttctcctcacttaatcaactcccacaaacaattt 675

                                                                        
Query: 585  agaatacttagagtattcagttcctttaagtattactaactttaattatttctaaattga 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  agaatacttagagtattcagttcctttaagtattactaactttaattatttctaaattga 615

                                                              
Query: 645  aggttaaacccaattgacttcataaccaggcagtttgaaatattggaaag 694
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  aggttaaacccaattgacttcataaccaggcagtttgaaatattggaaag 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)