BAC Information

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BAC

Clone NameMSMg01-182M18
Chromosome1 (Build37)
Map Location 179,199,746 - 179,352,492
singlet/doubletdoublet
Overlap genenone
Upstream genePld5, Cep170, Sdccag8, LOC666235, Akt3
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182M18.T7 (MSMg01no182_m18.b1)MSMg01-182M18.TJ (MSMg01no182_m18.g1)
ACCAG375578AG375579
length700734
length of high quality
(start - end)		361 (47 - 407)277 (82 - 358)
definitionCHROMAT_FILE: MSMg01no182_m18.b1 PHD_FILE: MSMg01no182_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:39 2005CHROMAT_FILE: MSMg01no182_m18.g1 PHD_FILE: MSMg01no182_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,352,156 - 179,352,492)(179,199,746 - 179,200,022)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATC
CGCGGAATTCTAATTCTCGAGTGCCGTTGAATGCCTCTTGGTTGAGTCTA
TTACTCACTAACAATCAAGAAATCCTGCCCTGGAATGGTTTACCCTGGTA
GTTGAACAAAATGCATTGTTCTCGAGGCAATGAATGCTGCTTCAATACGC
TTATGATTTTGATCTTAAATGTCCCATAAAGACCACTGTTGGCAGATGGT
AGAACCCTTAGGAGATGGATCCCAGTGGGAGGTTTAGTCCCTGGGGGAGA
TGGCCTTGGAAAGCATTCTTGTATCCTAGTAGCTTTCCTTCTTGTCTTCC
TATCTTTCTACCAGATGCCCTTGTCTTTATGTACTGTGCAGCCAAGGGGG
CCAAGTGGTCTTCCCCCCCAAACCTTTGAAATAATTCTAAGCTGATGACC
TCAGGTATTTTGTTATAGCATCGAAAACTGGATAATAGAATGTGAAAGGA
CTCAGCCCACGTTTTCCCTTGCTGGTGGCCAAGCAATCTCAAGTAGAATA
TTACCTTACTGAAGTGGGTGCCCACCTCGAACTATGATTCACAGTCCTGG
CACCTTTAACACATTTCATCCATGTTACAAAATACCCCTAACTCCTATTC
TTTTGGTTTAGACCTTCCGTGTATTCCTGATCCCTCCCACTTTATACTCC


ACCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGGAGATAAAACCATT
GTGAACTGGGCAGAGGTAAGAACGCAGAGGACCAACAACTGATCTTGTGC
TAGGTTGATTTCATTATGAAGACAAAATGAAGAGTTTTCATATCCACTTC
AAAAGTATATATTGATGTGTAAATATTTTCTCTCATTTGCATATGTGCTC
ACATGAATGATATACAGAATATTACACTATACAGAATAAAATATATTTAT
GTTAGCAGGTGTTAAAGGCACAAAATTAATGTCTTCTCTACATTTGTATT
TTTGTTTGATTAATACCGTCCAAACTTTACCTATTTTTGTACATTGTTAT
TTACATTAATGTTACCAAACAATAAAAAGAATCTTGCCCTGGATTGATTC
CTCAGAACTTTTTCTTATCAGGTTTAAAACCATCTGAGAATTCATGAGGC
CGAAACAAGTGCACACCTGTGAGTTATAGACTAGCCCGATTTTTATACTG
AGTTGCCCTTTCTTACACCCCTTAACCCTGTCTCTTTTTGGACTCTTCAT
TTACAATATTCTTCCCCTTATATCATATGCTCATACCCTCTCTTTAATGT
TTTCTCGCACTTCGATCCTCTTTCTTACCATTTACACCGTATTACCTTTA
TACCACTGGATTGAACCCTCGTATTTTACTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_m18.b1 MSMg01no182_m18.b1 CHROMAT_FILE:
MSMg01no182_m18.b1 PHD_FILE: MSMg01no182_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:39 2005
         (361 letters)



>mm_chr1_179351932_179352692
          Length = 761

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 25  gtgccgttgaatgcctcttggttgagtctattactcactaacaatcaagaaatcctgccc 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgccgttgaatgcctcttggttgagtctattactcactaacaatcaagaaatcctgccc 502

                                                                       
Query: 85  tggaatggtttaccctggtagttgaacaaaatgcattgttctcgaggcaatgaatgctgc 144
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tggaatggtttaccctggtagttgaacaaaatgcattgttctcgaggcaatgcatgctgc 442

                                                                       
Query: 145 ttcaatacgcttatgattttgatcttaaatgtcccataaagaccactgttggcagatggt 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaatacgcttatgattttgatcttaaatgtcccataaagaccactgttggcagatggt 382

                                                                       
Query: 205 agaacccttaggagatggatcccagtgggaggtttagtccctgggggagatggccttgga 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacccttaggagatggatcccagtgggaggtttagtccctgggggagatggccttgga 322

                                                                       
Query: 265 aagcattcttgtatcctagtagctttccttcttgtcttcctatctttctaccagatgccc 324
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcattctgggatcctagtagctttccttcttgtcttcctatctttctaccagatgccc 262

                                                
Query: 325 ttgtctttatgtactgtgcagccaagggggccaagtg 361
           |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtctttatgtactgtgcagccaagggggccaagtg 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no182_m18.g1 MSMg01no182_m18.g1 CHROMAT_FILE:
MSMg01no182_m18.g1 PHD_FILE: MSMg01no182_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:39 2005
         (277 letters)



>mm_chr1_179199546_179200222
          Length = 677

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgggagataaaaccattgtgaactgggcagaggtaagaacgcagaggaccaacaactg 60
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 attgggagatacaaccattgtgaactgggcagaggtaagaaggcagaggaccaacaactg 260

                                                                       
Query: 61  atcttgtgctaggttgatttcattatgaagacaaaatgaagagttttcatatccacttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttgtgctaggttgatttcattatgaagacaaaatgaagagttttcatatccacttca 320

                                                                       
Query: 121 aaagtatatattgatgtgtaaatattttctctcatttgcatatgtgctcacatgaatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtatatattgatgtgtaaatattttctctcatttgcatatgtgctcacatgaatgat 380

                                                                       
Query: 181 atacagaatattacactatacagaataaaatatatttatgttagcaggtgttaaaggcac 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacagaatattacactatgcagaataaaatatatttatgttagcaggtgttaaaggcac 440

                                                
Query: 241 aaaattaatgtcttctctacatttgtatttttgtttg 277
           ||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aaaattaatatcttctctacatttgtatttttgtttg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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