BAC Information

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BAC

Clone NameMSMg01-182N13
Chromosome1 (Build37)
Map Location 49,744,523 - 49,744,836
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182N13.T7 (MSMg01no182_n13.b1)MSMg01-182N13.TJ (MSMg01no182_n13.g1)
ACCAG375614AG375615
length718698
length of high quality
(start - end)
318 (46 - 363)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no182_n13.b1 PHD_FILE: MSMg01no182_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:42 2005CHROMAT_FILE: MSMg01no182_n13.g1 PHD_FILE: MSMg01no182_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCAATATATATAATTTTTGGCAACTGTTCTTTCATTTTTGAAA
TAATTTATAGACTAAAAGTACCCTAAACATGGGAACTGAAGTTAAAATAA
AATTGAAAATATAAACCTGGCAACAATTTTTTTTAAAAACTTCAATTTAT
TATATTAAAATATGAGAATCAGTATTTTAGAAGCTCAATATTTTATATAA
TTATATAAATAAAAACATCAACAAATAAAAATATAATCATCTTAATTCAT
GTCAAAAATTAGTTATTCTAACTTAAATAATTTTGTAATATCAAATCTCA
AAGTCCTGTTAAACAAAAATACTCCACCACCAAGTATAACAAATGGAACC
CATTTGTTAACTGACCACCAAACGAAACACTGCTAGGCTGTACAAGGTCC
GGACACTAAACAGTCCTTACATCTTATAGAAAAATAATAATCCTGTTCTG
TTCACAGCCCCTAACAACAAAATTACTCAATGATAAATCTGGAGTATTCA
TAGATCACTCTTTTGCTTAGTCATCATCAGAGCTTCCTTCTGCTGTAGAT
GGGGGAAAATACACAGACCCAAAGCTAGACAATGTACATGTAGTGAAAGT
TCTTGAGATAATACTCAGTTCTGAATGCGATGCTTCTATCACATCCTTTC
CTTCAACCCAAGGTACTC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTACGTGGAAAATATAAGTAAATT
TTATTATTTTAATAATATTTTATTATTTTAATTGATTATATAATTGGTCA
CAAATCAGGCCTAAACAGATAAAAAAAATATTGAAATTATCCCATGCATC
CTATCAGATCACCATGGATTTAGGCTGATCTGCAATAGCAACATAAATAT
TAGGAAGCCAACATTCTCATGGATGCTGAACAACAATCTACTTAATGAAA
ACTTGGTCAATGAAGAAATAAGGAAAGAAATTAAAGACTTTTTAGAGTTT
GATGAAAATTTTTTCCCCCACACCCCCACTTATGGGACACAATGAAAGCA
GTCCTAAGAGGAAAACCCACAGCTCTGAGTGCTGTCAAAACGAAACTAGA
TTGTGTTACCTCACTCAGGATGATAGCCTCCAGGTCCAAACATTTGCCTA
GGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTACTACTCCATTGTG
TAGATGTACCACATTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTT
CTTTCCAGCTTCTGGCTATTAACATAAGCGTGGTACGAATATATATCTAT
CTTGTGTCCTTTTTACCTTTCGCGTATACTTCTGAATACATGCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_n13.b1 MSMg01no182_n13.b1 CHROMAT_FILE:
MSMg01no182_n13.b1 PHD_FILE: MSMg01no182_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:42 2005
         (318 letters)



>mm_chr1_49744508_49745225
          Length = 718

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattcaatatatataatttttggcaactgttctttcatttttgaaataatttat 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 329 ggaattcattcaatatatataatttttggcaactgttctttcatttttcaaataatttat 270

                                                                       
Query: 64  agactaaaagtaccctaaacatgggaactgaagttaaaataaaattgaaaatataaacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agactaaaagtaccctaaacatgggaactgaagttaaaataaaattgaaaatataaacct 210

                                                                       
Query: 124 ggcaacaattttttttaaaaacttcaatttattatattaaaatatgagaatcagtatttt 183
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 209 ggcaacaa-tttttttaaaaacttcaatttattatattaaaatgtgagaatcagtatttt 151

                                                                       
Query: 184 agaagctcaatattttatataattatataaataaaaacatcaacaaataaaaatataatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agaagctcaatattttatataattatataaataaaaacatcaacaaataaaaatataatc 91

                                                                       
Query: 244 atcttaattcatgtcaaaaattagttattctaacttaaataattttgtaatatcaaatct 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 90  atcttaattcatgtcaaaaattagttattctaccttaaataattttgtaatatcaaatct 31

                          
Query: 304 caaagtcctgttaaa 318
           |||||||||||||||
Sbjct: 30  caaagtcctgttaaa 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)