BAC Information

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BAC

Clone NameMSMg01-182N19
Chromosome1 (Build37)
Map Location 61,099,116 - 61,099,399
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
Downstream geneLOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182N19.T7 (MSMg01no182_n19.b1)MSMg01-182N19.TJ (MSMg01no182_n19.g1)
ACCAG375624AG375625
length840720
length of high quality
(start - end)		30 (98 - 127)284 (72 - 355)
definitionCHROMAT_FILE: MSMg01no182_n19.b1 PHD_FILE: MSMg01no182_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:44 2005CHROMAT_FILE: MSMg01no182_n19.g1 PHD_FILE: MSMg01no182_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTGATAACAAAACCTTATTGGTGTTGAAANGGTGGAGGGTGGTTGAAAA
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGGGGAAATTGATGTATCTGAAGAATATGATCCTGAGAGAGG
TAGCCCAATCACAAAAGAAGTCACTTGATATGCATTCTCTGATAAAAGAA
TATGAGCCCGGAAACTTAGAATACCCAAGATACGACTTGCAAAACACAAG
AAAATCATGAATAACGAAGACCGGGGTGTGGATGTTTCATTCCTCCTTAG
AATATGGAAGAAAACACCCATGGGGGGAGATACAAAGACAAAGGTTGGAC
ATGATACAGGGATATGGACCATCCATATACTAGCCCGCTTGGGGAACCAT
CGCGGAACCAATCGAAAATTTCTGACCCTATCCGCCAAGATAAAAAGATT
TTGGTAGAAATATGGTGCCACACCTTTATCGAGTACAACTTATGTCTGGG
CCCCGCAAATTTTATAAGTAAAAGCTTCTCACTCCTCCTGTGCCGATGGT
CCGCGGGGGGAAAAAAAATACTTCCTTCTTCTTCTTTCTTTTCGTCTGGA
CGGGCCCTCATATAATGAATGTGCGGGACCGGCCCCCCTCCTTCCTTGTC
TCTAACCCCAACACCACACATGGGGGTGAAAAAAAAAAAAAATTTACCTT
CTACTTCCCCTGCTTCGCGCCGGCACACGCTAAAACAAAAGGCCCCCCAC
ATGATGTGGAAAATAAAAATACAATTGGCCCCCCTTGCTTTTTTTTTTCC
CGTTACAGCACACTTGCGTGACCCCACCTTGGGTGTCCAT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGTGGGTAATATTTAATATTTCTTTAG
CAAATGTCCCATCACTCAATAATTTGTAAGCTCATAGTATATACTTGCAA
AGGTGCTAATGACCTGCCTTATGTACTAGGGCCTTCCAAAGACTGTTAAT
TACTATGATAGGCAAATCTTTGCTCTTAAATGACAGGCACACAGCAAATA
CCATGCAGAAGTAGCTCATGTGCTGAGGTGGTCCACAAGGTGACTCAGAA
CTATACAGACTTGGTTTATAGGTTGTTCTCTCACTCATGCTTCTCCCAAG
TTGTTGTTCTTATGCTCCCCCCCCCACAGTCTTATCCTGAGTGATGAGGA
GATGACCCCCCCACCCCCCCAAACCCAAGGAGTCCAGGTACATCTAGCAG
ATAAGAAGAATAATTGTGCGTAGGTTGTGAAATGCTGTTAGCATTTTCTC
CATCCCTCAGTTACAGTCCAACAATTAATTTTGCGGGACCCAATCTCAGC
AAAGTGACATACTTTGCCAAAATAACAGTTATAAATGTTACCCCTTTCCA
ATATTTTCCACCATATTAGAACACCCTCTCCTTTAAATACTGTTCCTCAA
TTGTTTAATCTACACTTCTTACTATCTTCCTTTTTATGATTCCTTTTCCC
ATCCTTTTTCCTGTCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_n19.g1 MSMg01no182_n19.g1 CHROMAT_FILE:
MSMg01no182_n19.g1 PHD_FILE: MSMg01no182_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:44 2005
         (284 letters)



>mm_chr1_61098916_61099599
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtgggtaatatttaatatttctttagcaaatgtcccatcactcaataatttgtaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aaagtgggtaatatttaatatttctttagcaaatgtcccatcactcaataatttgtaagc 425

                                                                       
Query: 61  tcatagtatatacttgcaaaggtgctaatgacctgccttatgtactagggccttccaaag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcatagtataaacttgcaaaggtgctaatgacctgccttatgtactagggccttccaaag 365

                                                                       
Query: 121 actgttaattactatgataggcaaatctttgctcttaaatgacaggcacacagcaaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 364 actgttaattactatgataggcaaatctttgctcttaaatgacaggcacacagcaaataa 305

                                                                       
Query: 181 catgcagaagtagctcatgtgctgaggtggtccacaaggtgactcagaactatacagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catgcagaagtagctcatgtgctgaggtggtccacaaggtgactcagaactatacagact 245

                                                       
Query: 241 tggtttataggttgttctctcactcatgcttctcccaagttgtt 284
           ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 244 tggtttataggttattctctcactcatgcttttcccaagttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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