Query= MSMg01no182_n21.b1 MSMg01no182_n21.b1 CHROMAT_FILE:
MSMg01no182_n21.b1 PHD_FILE: MSMg01no182_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:44 2005
(325 letters)
>mm_chr1_130943961_130944685
Length = 725
Score = 427 bits (221), Expect = e-124
Identities = 265/295 (89%), Gaps = 26/295 (8%)
Strand = Plus / Minus
Query: 55 ttacacacgcatttatttcattttaccttttccctt--aaaaagccctaacaaagtttgc 112
||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||| |
Sbjct: 617 ttacacatgcatttatttcatttta--tttttcctttgaaaaagccctaacaaagttttc 560
Query: 113 agtgtcctaata----------------------acatttatcaacaatgtacaattttc 150
|||||||||||| |||||||| |||||||||||||||||
Sbjct: 559 agtgtcctaataacagcagggattataaaaagatacatttattaacaatgtacaattttc 500
Query: 151 ctagcggaatctataataaacttttcatatgcaaatctccccatcaatgaaacacacaaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctagcggaatctataataaacttttcatatgcaaatctccccatcaatgaaacacacaaa 440
Query: 211 gggccagacagagaagaaagaaatggcatgaagctaattttccatcagctctgagaacta 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gggccagacagagaagaaagaaatggcatgaagctaattttccatcagctctgagaacta 380
Query: 271 agactgaaataccctaagttaagagataaatctccaaaaacttcaattattgtat 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agactgaaataccctaagttaagagataaatctccaaaaacttcaattattgtat 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_n21.g1 MSMg01no182_n21.g1 CHROMAT_FILE:
MSMg01no182_n21.g1 PHD_FILE: MSMg01no182_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:44 2005
(340 letters)
>mm_chr19_55257211_55257950
Length = 740
Score = 613 bits (317), Expect = e-180
Identities = 338/353 (95%), Gaps = 13/353 (3%)
Strand = Plus / Minus
Query: 1 tttcttctggcaagttggtctgaaagctcactggtaggattatgaacatctgtttgaaag 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 435 tttcttctggcaagttggtctgaaagctcactggtaggactatgaacatctgtttgaaag 376
Query: 61 taaatgatctaaagtctagggcatggagatggtttttacttcacttcactggggcgcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taaatgatctaaagtctagggcatggagatggtttttacttcacttcactggggcgcatt 316
Query: 121 cacagatagcatcctgttcacctcgctcagggctctttccatcaaacctgaaccctgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cacagatagcatcctgttcacctcgctcagggctctttccatcaaacctgaaccctgtgg 256
Query: 181 cacttaaagaagaggatccttaaagaagaggatctggc-------------ttttttttt 227
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 cacttaaagaagaggatccttaaagaagaggatctggctttttttttttttttttttttt 196
Query: 228 ttttttttgctctgaggcatacaattacagtagtcagggcagtaggaattctggcccata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttttttttgctctgaggcatacaattacagtagtcagggcagtaggaattctggcccata 136
Query: 288 ctaagtatgaaggaattacactcttggctgaaaactaatagctctacgggaag 340
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctaagtatgaagggattacactcttggctgaaaactaatagctctacgggaag 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
