CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAACCTTTATGTCAAAGTAAAGCTGAAAAAGGACTACTGTCTTAC
TTAGGGTTTTATTGCTGTGAAGTGACCCCATGACCAAGGCAACACTTATA
AAGGCAAACATTTAATTAGTGCTGGCTCACAGTTTGAGAGGTTTAGTGCA
TTATTATCTCTGCAGGAAGCACGGCAGCATCTAGGCAGATGTGGGGCTTG
AGGAGCCTAAAGTTCTACATTGTGATTCAAAGGTAGCCAGGAAAAGACTG
ACTTCTAGTCAGCTAGGAGGAGGGTCTCACAACTGATATTCACAGTGACA
CACTTTCTCCAGGGCCACACTTACTCCAATAAGGCCACGCTTTCTAATAG
TGCCACTTTCTGGGCCAAGCATATTCAAACCACCACAATCTGCTCCCTGG
CCCTCATAGGCTTGTTCAGGCATATGAGTCTATGAGGGCCAACCTAGCCA
TAGCATAATAAAAAATACATTGAGTCCAACTTCCAAATTCCCCATAGTCT
ATAGCAGTCTCAACACTGATAAAAGTCCAAAGTTCAAAGTCTCTTCTGAG
ATTCATCCAATAATTTAACTGTAATTCCCCTATAAAGTCAAAATTAAAAA
GCAGACCACAAATCTCCAATATCACAGGATATACATTACTATTCCAAATG
CCATAGCGAGGAAATACTGTATGGAAGCAGGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGGGTCTAGACTTGGCAGGG
CACATATCTTCATGGAAGAAATCAACAGGGAAAGACAAGTGTTCTGCCTA
AAGTTTTCCTTCCATACCCTTGGTGCTGAAACACAGAAAAAATTTTGCAG
AAACGAAAGCTGCATTTCCTTCCAGAGGGTGGGAGTGTGTGTCAGTGGAC
ATGTTCATGTGTAATAGTGCTTCTGTGTTTAGTGATGTCTCTCTCAAGTG
GAGTGTGCTTTACATTTCCAGTCAGGAAAATTTCCTGTGTAAGTCAACGT
CATGTACTGCAGGTCACCTCCAACCCGAGTGAGATGTCTACACACAACTC
TCACAGCAGCAAGCAGAAACATGAGTATGTCTAGTCTTTACCTGACAGGA
GAGTCAAGGAATATTCATTGGTCTTGGTTGAGAAGCACCGGATGACAAAT
TTCCACATTGTCTTCTTCTTTCAGGGCTATCCTCAAAGTACTTGAATGCT
ATTGTGTGAAAGGCACTTTTATTTAGAAACCATTACATTTCACTATGGAT
GGCACACTGCGAGTGTGCGTATAATTGCGCGCCCCCGCTATTTCTTCATA
CTACCATCGCCCGCGCTACTTGGTTTCGCCCGTAAATACCCCCCCGCCCC
CGTACCCTCATTCTTTTTCCGTCTTTGCCCATGCTCTACACCCCTN

Query= MSMg01no183_p04.g1 MSMg01no183_p04.g1 CHROMAT_FILE:
MSMg01no183_p04.g1 PHD_FILE: MSMg01no183_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:06 2005
         (481 letters)



>mm_chr1_46261613_46262496
          Length = 884

 Score =  801 bits (414), Expect = 0.0
 Identities = 464/482 (96%), Gaps = 3/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cctgggtctagacttggcagggcacatatcttcatggaagaaatcaacagggaaaga--- 59
           ||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||   
Sbjct: 203 cctggatctagacttggcagggcacacatcttcatggaacaaaccaacagggaaagattt 262

                                                                       
Query: 60  caagtgttctgcctaaagttttccttccatacccttggtgctgaaacacagaaaaaattt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caagtgttctgcctaaagttttccttccatacccttggtgctgaaacacagaaaaaattt 322

                                                                       
Query: 120 tgcagaaacgaaagctgcatttccttccagagggtgggagtgtgtgtcagtggacatgtt 179
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcagaaacaaaagctgcatttccttccagagggtgggagtgtgtgtcagtggacatgtt 382

                                                                       
Query: 180 catgtgtaatagtgcttctgtgtttagtgatgtctctctcaagtggagtgtgctttacat 239
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catgtgtagtagtgcttctgtgtttagtgatgtctctctcaagtggagtgtgctttacat 442

                                                                       
Query: 240 ttccagtcaggaaaatttcctgtgtaagtcaacgtcatgtactgcaggtcacctccaacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttccagtcaggaaaatttcctgtgtaagtcaacgtcatgtactgcaggtcacctccaacc 502

                                                                       
Query: 300 cgagtgagatgtctacacacaactctcacagcagcaagcagaaacatgagtatgtctagt 359
           | ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct: 503 ccagtgagatgtctacacacagctctcacagcagcaatcagaaagatgagtatgtctagt 562

                                                                       
Query: 360 ctttacctgacaggagagtcaaggaatattcattggtcttggttgagaagcaccggatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 563 ctttacctgacaggagagtcaaggaatattcattggtcttggttgagaagcactgaatga 622

                                                                       
Query: 420 caaatttccacattgtcttcttctttcagggctatcctcaaagtacttgaatgctattgt 479
           |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 623 caaattaccacattgtcttcttctttcaggactatcttcaaagtacttgaatgctattgt 682

             
Query: 480 gt 481
           ||
Sbjct: 683 gt 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 884
Length adjustment: 10
Effective length of query: 471
Effective length of database: 874
Effective search space:   411654
Effective search space used:   411654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)