TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTAGATAAAAACTCTAAAAGAGCTATGAAAAATTCTAAAAGAAG
TGTTTTCACTCTCCAGAGATCTCCACACAGCTGATCCAGATAAATACTCT
AGCAAGAACTCTTCTCTTGCTAGAAACAAATATTTAAAATAACTACTGGG
GCTGGAGAGTGTGATTGGTGTTTAAGAGCACTGTCTACTCTTCCAGAGGT
CTTGAGTTCAATTCCCAGCAACCACATGACAGATCAAAGCCACTTGTAAT
GGGATCAAATGCCCTCTTCTGGTGTGTCTCAAGAGAAAGACTGAGTACTC
ACATACATAATACTAGTAAATCTTTAAAAACAAAACAAAGCAAAGCAAAA
AAAAAAAACAAAATAAAACAAACAATTGCTATCATTTTCTGCTAGTTTGT
CAACTCATCTCCTGTAGACAAAAAGCTCAGTCTTTCATTTACATATCAAT
TTAGTCATTTACCCCAGGTTCCTTTAGGGCTGTCCCATAAATCAAAAATT
CATGCCCTAGCCTCTTGACACTTAAGAAATAACAGTGTGTGTGTGTGTGT
GTGTGTGTTGTNTNTTNNTTTTNNNTTTTTTTTTTTTTTTTTTNTTTNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
CCTTTCTTTTTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAAGATACAATTCACAGAGCACTTG
AAGTCCAAGAAAAAGGAAGAACAAACTGTGGTTATTTTGGTCCTTCTTAG
AAGGTGGAAGAAAATACCCATGAGAGATGTTGCAGAGACAAACTGTGGCA
CAGAGACTGAAGGAAAGACCATGCAGAAACTGATTCCCCTGGGGATCTAT
CCCATATACAGTCCTCACACCCAGACATTATTGTGAATGCCAACAAGTGC
TTGTTGACAGGAGCTCTCTCCTAAGAGACTTTTTTTCTTTTTTTCTAATT
TTTTTAAATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCTCAAAA
GTCCCCCATACCCCTCCCCCGACTCCCCTACCCACCCACTCCCACTTTTT
GGCCCTGGCGTTCCTCTGTACTGGGGCATATAAAGTTTGCATGTCCAATG
GGCCTCTCTTTCCAGTGATGGCCGCCTAGGCCATCTTTTGATACATATGC
AGCTCCTGAGAGACTCTTATCAGTGCCTGACAAATACTGAAGTGGATGCA
CTCAGCTAACCATTTAACTGAGAACAGGGTCCCCAAATGGAAGAGCTAGA
GAAAAGATCCAAGGAGCTGANTGAAGGGGTTTGCAACCCCATATGAGGAA
CAACAATATGAAACAACCAGTACCCGCAGAGCTCAC

Query= MSMg01no183_p11.b1 MSMg01no183_p11.b1 CHROMAT_FILE:
MSMg01no183_p11.b1 PHD_FILE: MSMg01no183_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:07 2005
         (565 letters)



>mm_chr1_101999105_102000069
          Length = 965

 Score = 1029 bits (532), Expect = 0.0
 Identities = 556/568 (97%), Gaps = 7/568 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctttagataaaaactctaaaagagctatgaaaaattctaaaagaagtgttttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttagataaaaactctaaaagagctatgaaaaattctaaaagaagtgttttc 263

                                                                       
Query: 64  actctccagagatctccacacagctgatccagataaatactctagcaagaactcttctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actctccagagatctccacacagctgatccagataaatactctagcaagaactcttctct 323

                                                                       
Query: 124 tgctagaaacaaatatttaaaataactactggggctggagagtgtgattggtgtttaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctagaaacaaatatttaaaataactactggggctggagagtgtgattggtgtttaaga 383

                                                                       
Query: 184 gcactgtctactcttccagaggtcttgagttcaattcccagcaaccacatgacagatcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcactgtctactcttccagaggtcttgagttcaattcccagcaaccacatgacagatcaa 443

                                                                       
Query: 244 agccacttgtaatgggatcaaatgccctcttctggtgtgtctcaagagaaagactgagta 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agccacttgtaatgggattaaatgccctcttctggtgtgtctcaagagaaagactgagta 503

                                                                       
Query: 304 ctcacatacataatactagtaaatctttaaaaacaaaacaaagcaaagcaaaaaaaaaaa 363
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcacatacataaaacaagtaaatctttaaaaacaaaacaaagcaaagcaaaaaaaaaaa 563

                                                                       
Query: 364 a-------caaaataaaacaaacaattgctatcattttctgctagtttgtcaactcatct 416
           |       ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaaaaaacaaaataaaacaaacaattgctatcattttctgctagtttgtcaactcatct 623

                                                                       
Query: 417 cctgtagacaaaaagctcagtctttcatttacatatcaatttagtcatttaccccaggtt 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 cctgtagacaaaaagctcagtctttcatttacatatcaatttagtcatttaccccaagtt 683

                                                                       
Query: 477 cctttagggctgtcccataaatcaaaaattcatgccctagcctcttgacacttaagaaat 536
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 cctttagggctgtcccataaatcagaaattcatgccctagcctcttgacacttaagaaat 743

                                       
Query: 537 aacagtgtgtgtgtgtgtgtgtgtgtgt 564
           ||||||||||||||||||||||||||||
Sbjct: 744 aacagtgtgtgtgtgtgtgtgtgtgtgt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)