BAC Information

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BAC

Clone NameMSMg01-184B23
Chromosome1 (Build37)
Map Location 106,364,579 - 106,364,857
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20, Rnf152, LOC100041985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184B23.T7 (MSMg01no184_b23.b1)MSMg01-184B23.TJ (MSMg01no184_b23.g1)
ACCAG376503AG376504
length834779
length of high quality
(start - end)
138 (55 - 192)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no184_b23.b1 PHD_FILE: MSMg01no184_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:21 2005CHROMAT_FILE: MSMg01no184_b23.g1 PHD_FILE: MSMg01no184_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAGTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTG
GATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGCGGTTTT
TGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATA
TTAAACTATCCCTGCATCCCTGTAATAACACCCACTTGCCCACCTTTGAT
GCTCCGTCTTTTTGTTTTTTTATTATCCCCCCTCTTCCATTATCTCTCCC
ACTATTCATCACAAACATCCCTATACATTTTTTTATATTTAATAAACCCC
CCCCGACTCCCCCATATTTTTTTCTAATTTCCCCCCCCCCCCCCCCGTTT
TTTTTATTTATCTTTATTTTATTTTGTTTCCCCCCCCCTTTTTAAATATA
AAATTCTTTTTCTTCTTGCGTTTGTTTTTCCCCCCTTCCTTTCCTCCATC
TTTCTTTTTTTTTCTCTACATTTTTTCTCCATCCCACATTTTTTTTTATT
TCCTCCCCCTCTCCTTTTTATATTCCCCTTGTATTACCATTTTCTCACTC
CCCCCCTCTCTATTATCTCCTTACTCCTATATCCAATACTTATCCTATTC
CTCCTATATGTTTATACAATCTTTCTACTCTTTATATTCTTTACATTAAT
CACATCCTTTCCCTCCTTATTCTCATTTTTTTTTAACTTCCTACTTTTCC
CCCCTTTATTTCCCCTCCCTCTTTATTTTTTTTTCTCCCCTCCCACCAAT
CCTAATAATATATTTTTCTTTCCCCATCTATCTN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGTGGTACTTTGATTCATCAAG
ATTTTGTACAGAGGGAAAGTCACTGGTGGGATAACTGTTATTCTTTCCTG
CTTACTGGCCATTGACAGATGGAGCTGGGAACTTGTAATCATAGAATTTT
CTTATTTTGTTTTTCTGTCTCAAATTTCTTTGTTTGTCTGATTTTGAACT
TGAAAAGGAGAAGGAAAAGAAGAAGGAAAACAGAGAATGGAGATGACAGA
ATCTAGAAAGATAAGCACTATATTTATTGAAGAGGTCAGATCAGGAATTT
TAGAAAGATTTTTTTTCTCTCCCCCCCCCCCACTACAGGAGAGAGAAAAC
TGACCTGCTGTTTTTCCCCCCACGACATGTAAACCTACTGCCTTGGGTAG
GTCCTTGTCTCTTTCCTTCCCTCTATACCACCTTAGTTTTATTATGTTCA
TGTTTCCTTGACCACCACTTTTTTACTCTACGCAAACGATCCTATGATAT
CTGTTTCTTGGATATATTATGATACAACGTGATCTTGTTTTCATAGTATA
TCTTTCCTCCATTTTTTCTCTCCTTCTTTTTTTCTCTTCGTTAACAGTTT
CTTTTTATCCGTACACATATAACTTATTATCTTCACTCTTTTTCCTCACG
GTTTTTTTTTTTGCCGTCCTTTTATCATTGTTTTTACCATCTTTATATTT
TATTCTTTTATTACCTGTAATCATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_b23.g1 MSMg01no184_b23.g1 CHROMAT_FILE:
MSMg01no184_b23.g1 PHD_FILE: MSMg01no184_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:21 2005
         (279 letters)



>mm_chr1_106364483_106365161
          Length = 679

 Score =  516 bits (267), Expect = e-151
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtggtactttgattcatcaagattttgtacagagggaaagtcactggtgggataact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tatgtggtactttgattcatcaagattttgtacagagggaaagtcactggtgggataact 316

                                                                       
Query: 61  gttattctttcctgcttactggccattgacagatggagctgggaacttgtaatcatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttattctttcctgcttactggccattgacagatggagctgggaacttgtaatcatagaa 256

                                                                       
Query: 121 ttttcttattttgtttttctgtctcaaatttctttgtttgtctgattttgaacttgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttttcttattttgtttttctgtctcaaatttctttgtttgtctgattttgaacttgaaaa 196

                                                                       
Query: 181 ggagaaggaaaagaagaaggaaaacagagaatggagatgacagaatctagaaagataagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggagaaggaaaagaagaaggaaaacagagaatggagatgacagaatctagaaagataagc 136

                                                  
Query: 241 actatatttattgaagaggtcagatcaggaattttagaa 279
           ||||||   ||||||||||||||||||||||||||||||
Sbjct: 135 actataaagattgaagaggtcagatcaggaattttagaa 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)