BAC Information

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BAC

Clone NameMSMg01-184L07
Chromosome1 (Build37)
Map Location 66,922,560 - 67,046,808
singlet/doubletdoublet
Overlap geneMyl1, LOC100043192
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
Downstream geneLancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184L07.T7 (MSMg01no184_l07.b1)MSMg01-184L07.TJ (MSMg01no184_l07.g1)
ACCAG376913AG376914
length857719
length of high quality
(start - end)
205 (57 - 261)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no184_l07.b1 PHD_FILE: MSMg01no184_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:11 2005CHROMAT_FILE: MSMg01no184_l07.g1 PHD_FILE: MSMg01no184_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,046,607 - 67,046,808)(66,922,560 - 66,922,839)
sequence
TGGNNTTAGCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCCCTGCTCACAGTTCTCACAGGGGCTTAGAAGT
GAGGTCACTGAGTAAGGTATAATTATGGGGAAGGAAGTCTGCCCAGTCAC
CCAGGAGATGGCATCAATCTCTTGTGACGTGGTAAGCCAGCGCATGAGAA
TTGCCCCAGTGATACCAGGAGCTACATATATTTACATGGCCTTCCTTCCT
TTCCTCTGTTGATCGACTAATTGTTTCATCAATCACCCCACTATTGCTTT
TTTCTCTCCTCACCCAACCGACCACCGCCTTTTTTTTTACTCATTTAAAA
ATCCCCCCCCCCACCCAACCTTTTTTTTTTTCCCCCCCCCCCCCCCCCCC
TTCTATCTCATATTCTCCCTTTATTTTTTTTCCCCCCCCCCCCATATAAA
AAATTTTCTTTTTTATTTCTTTTTTCCTTTTCTTTTCCCCCCCTTCTTTT
TCTACCCCCCTTTCTCTCTATTCTCCAACCATCATTTCCACTTTCCCCAC
TTTTTTTTTTTTTTTCTTCCCCCCCCCTCCTTCTTTTTTTTCCTCCTCTT
TTTTCCACTTTCCCCCCCCCACCCCGCCTTGTATTTTATCTTCTTCTTAT
CTTATTCCATTCCTTCACATCTTCCCTCCCTTCTCTTTTTACCTTCACCC
TACTTTTTATCCGTCTTTTTACTTCTCACCTTTTTCTATCTTCCTGATCC
CCCTATGTAGGACTCTCGCTTCCTTTCTCCTCATTTATTCTTCCTCTCCT
TTTTTTTTTTTTTCCCCCTCCTCTTAACCTCTAATTTTCCTTCTCTTTAC
AATTTTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGGCATTGGGTCTACTGCCAC
TTTAAAAATATTTTCTTCCAATAGACTTTGTACATCTGCAACTTCCACTT
GTTTTATCCAACACACATTTGTCTTGCCCATAGTAAGTGCTCAACAGTAC
TGCCTACGCATGCTCAAACAGAGCTCTTCAGTGGATGCCTATTCACTGCA
CCTGACATTTCATCTCTTCCTGCTTTGTGTGTTTATCATCTCAATCAATA
ACAGTTCACAAGCCAGAAATCCCGTTACTTGATGTGTAATGTGCATTTTT
TTCAGTATATTGCTAACACCTAACATGGTAAAGATATAGAAATTCTTCAA
CAAATACTTACCCAACTTAATAAGGAATCATCTTTAGATTAAAAATAAAG
TATGAGGTAATTTTTATGAAAGTGGTTCAGTGAGTGTATTAACCTCTGGT
AAGTCTGAATTACAAGATATAAACTCAGTAAACAGTGCAAAATACAACAT
ATGCATAAAGACTCCTGGGGGAGGGGAAGGGAGGCCACCTTTTCTTTCTT
CTTTTTTGTTATGTCACTTCATCTATGCCCCACATTCTCTTTATTTATTT
TTATAATCCTTATTCCCAAGCCCCATATCCCTTTTCTAACTTTTCCTACA
CATAATACATTCGCCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_l07.b1 MSMg01no184_l07.b1 CHROMAT_FILE:
MSMg01no184_l07.b1 PHD_FILE: MSMg01no184_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:11 2005
         (205 letters)



>mm_chr1_67046404_67047008
          Length = 605

 Score =  383 bits (198), Expect = e-111
 Identities = 201/202 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccctgctcacagttctcacaggggcttagaagtgaggtcactgagtaaggta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggaattctccctgctcacagttctcacaggggcttagaagtgaggtcactgagtaaggta 346

                                                                       
Query: 64  taattatggggaaggaagtctgcccagtcacccaggagatggcatcaatctcttgtgacg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taattatggggaaggaagtctgcccagtcacccaggagatggcatcaatctcttgtgacg 286

                                                                       
Query: 124 tggtaagccagcgcatgagaattgccccagtgataccaggagctacatatatttacatgg 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tggtaagccagcgcatgagaagtgccccagtgataccaggagctacatatatttacatgg 226

                                 
Query: 184 ccttccttcctttcctctgttg 205
           ||||||||||||||||||||||
Sbjct: 225 ccttccttcctttcctctgttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no184_l07.g1 MSMg01no184_l07.g1 CHROMAT_FILE:
MSMg01no184_l07.g1 PHD_FILE: MSMg01no184_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:11 2005
         (280 letters)



>mm_chr1_66922360_66923039
          Length = 680

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggcattgggtctactgccactttaaaaatattttcttccaatagactttgtacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttggcattgggtctactgccactttaaaaatattttcttccaatagactttgtacatc 260

                                                                       
Query: 61  tgcaacttccacttgttttatccaacacacatttgtcttgcccatagtaagtgctcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaacttccacttgttttatccaacacacatttgtcttgcccatagtaagtgctcaaca 320

                                                                       
Query: 121 gtactgcctacgcatgctcaaacagagctcttcagtggatgcctattcactgcacctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactgcctacgcatgctcaaacagagctcttcagtggatgcctattcactgcacctgac 380

                                                                       
Query: 181 atttcatctcttcctgctttgtgtgtttatcatctcaatcaataacagttcacaagccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcatctcttcctgctttgtgtgtttatcatctcaatcaataacagttcacaagccag 440

                                                   
Query: 241 aaatcccgttacttgatgtgtaatgtgcatttttttcagt 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcccgttacttgatgtgtaatgtgcatttttttcagt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)