NNGGTGCAGTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGACGACTCAGCTTGGAATATTGGTAATTCTTAGAATAACTGCACCG
ATTTTTCTCTGACACTCACTGGGAGGAGGGTTTATCTGCTGTTGTCAGGT
TGCCTTACTCTAATAATCATTAAAATAAATGATATTTTCAAATATTTGTC
ACTGTTAGCAACTGATAGATGCACCCCTCAGTCTGTTGTAGAATGTGTGT
GTTTCACTTAACAGCAGAAAATTTTAAGGCAATGCCATGTTCTTAATTTA
CTATGACATTTCATATTATTAGCCACACTGGTCTCATACTTGTTTTAAAA
TATATTATTATGTTTTGTTCCACTTAAATATATCATATATATAGACAGAA
GACAAAGCAACAGTGTCGCCCACAAGTCTGTATCTATGCTGTGATACTTA
CTTCTTTCCCACCCCACCATTTCATCCACAATAATTCATAGAAAATAATG
TGTGCAAAAATACATACATACGTTACATGGTGTTTTCAGTGTAAACATGT
ACTACTGCCACATGATTGCATGTTTGTGAGTAAATATGTGTGCAATATTC
TTTTTTTAATTTTCTTTCAACTCTTTATTGATTTTATGGATTCAGAGTCT
ATAAAGAAACCCCCAAGTTTAGCTACCTGCAGAGATACCCCAGATCAAAA
ATTTTTATTAGATATTTTCTTCATTTACATTTAAATGTTATCCCCTTTCC
TATTTTCCCCTCTGAAAATCCCCTAACCCCTCCCCTCTTCCCATGCTCCC
CAGCCTACCCACTCCCATTCCTGGCCCTGGCATCCCCCTATACTGGGGGC
AAAAAACCTGCACAGGACCTAGGGCCTCTCCTCCCATTGATGACCCACTA
AGGTATTCAATATATATATATATTGGTTTTTTCCAAAGAAATTTTCTTTT
TATATCCCCGGCTGTTTTTTCAATATCTCTTTTTAAATAAATTCTGTTTT
CAAACTAAAAAAAATATTCTGCCTTCTTTTTCTCTATATTTTGTGAAAAA
TATACAGTTGGCCCCTCCCCTCCCTTTTCTTTTATTAATTTTTCTAACAC
CCTACTTTCTTTTTTTTTTTTTTTTTATTAATTATCTATATATATTTCTA
TTTTCTTTATTCCTTTTTTTTTTAATATACTTAATTTTTTTACTTTTCCT
CTTTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATTAAGAAACTTGGGGT
TGTATTGTGTAAATGGAATTTATGAGATATAGGTCCCATCGTTGAGTGGC
TTCAAGAGGAATAAACAAATTGGCCAGCAATTTCCTTCGTTCCAGGGTAT
TCCTATCACAGAAGTCAGTGTGCTGCAAACATCTGTGGTTCAGACTCCAC
GTGGTATTTTACTTTGTAGTCTGAGAATCGAAGTAATTTAATGGAAATAT
CACATTTATTTGTGTTTTCGTAAGGATATGAACCAGGTTTGAACATTTAG
CTTCTGGGATAGTTTAAGTTTCCTACCACTTTGCACATCTCCAAATGACG
TCTCTCTCTTTGTGGGACATGGGTCAGGTAGATACTCTCTGGAAGATGTT
TTGTGACTTTGAATTAAATGAAATAACTAAATGTTGAGAGGACCTTCACT
CAAACATTTTTTGCTTACTGAAAAAAGTAATTTTATTAAGCATGGTCCTC
CTTTGAAGACATTAGCAAGCATTATCTTCACAGTTATAAACAACTCTCAG
ATTTGCCATATTCTTGTATCTGGCTGCTATTTCGTATGTAGGAGTAGCAT
CTGTTTGTATATGGGTGATTTTCTTCAGAGAAAAATAATTCAATAAAGCT
GAAAACTTGGTGAATAATC

Query= MSMg01no184_m05.b1 MSMg01no184_m05.b1 CHROMAT_FILE:
MSMg01no184_m05.b1 PHD_FILE: MSMg01no184_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:16 2005
         (414 letters)



>mm_chr1_56230170_56230983
          Length = 814

 Score =  772 bits (399), Expect = 0.0
 Identities = 408/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctagacgactcagcttggaatattggtaattcttagaataactgcaccgatttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggaattctagacgactcagcttggaatattggtaattcttagaataactgcaccgatttt 555

                                                                       
Query: 64  tctctgacactcactgggaggagggtttatctgctgttgtcaggttgccttactctaata 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctctgacactcactgggaagagggtttatctgctgttgtcaggttgccttactctaata 495

                                                                       
Query: 124 atcattaaaataaatgatattttcaaatatttgtcactgttagcaactgatagatgcacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atcattaaaataaatgatattttcaaatatttgtcactgttagcaactgatagatgcacc 435

                                                                       
Query: 184 cctcagtctgttgtagaatgtgtgtgtttcacttaacagcagaaaattttaaggcaatgc 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 434 cctcagtctgttgtagaatgtgtgtgtttcacttaacagcagaaaaatttaaggcaatgc 375

                                                                       
Query: 244 catgttcttaatttactatgacatttcatattattagccacactggtctcatacttgttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catgttcttaatttactatgacatttcatattattagccacactggtctcatacttgttt 315

                                                                       
Query: 304 taaaatatattattatgttttgttccacttaaatatatcatatatatagacagaagacaa 363
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 314 taaaatatattattatgttttgttccacttaaatatatcatatctatagacagaagacaa 255

                                                              
Query: 364 agcaacagtgtcgcccacaagtctgtatctatgctgtgatacttacttctt 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agcaacagtgtcgcccacaagtctgtatctatgctgtgatacttacttctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_m05.g1 MSMg01no184_m05.g1 CHROMAT_FILE:
MSMg01no184_m05.g1 PHD_FILE: MSMg01no184_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:16 2005
         (283 letters)



>mm_chr1_56070803_56071485
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccaaattaagaaacttggggttgtattgtgtaaatggaatttatgagatataggtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccaaattaagaaacttggggttgtattgtgtaaatggaatttatgagatataggtcc 260

                                                                       
Query: 61  catcgttgagtggcttcaagaggaataaacaaattggccagcaatttccttcgttccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcgttgagtggcttcaagaggaataaacaaattggccagcaatttccttcgttccagg 320

                                                                       
Query: 121 gtattcctatcacagaagtcagtgtgctgcaaacatctgtggttcagactccacgtggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattcctatcacagaagtcagtgtgctgcaaacatctgtggttcagactccacgtggta 380

                                                                       
Query: 181 ttttactttgtagtctgagaatcgaagtaatttaatggaaatatcacatttatttgtgtt 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ttttactttgtagtctgagaatcgaaggaatttaatggaaatatcacatttatttgtgtt 440

                                                      
Query: 241 ttcgtaaggatatgaaccaggtttgaacatttagcttctggga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcgtaaggatatgaaccaggtttgaacatttagcttctggga 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)