Query= MSMg01no185_a19.b1 MSMg01no185_a19.b1 CHROMAT_FILE:
MSMg01no185_a19.b1 PHD_FILE: MSMg01no185_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:39 2005
(516 letters)
>mm_chr1_66531221_66532137
Length = 917
Score = 946 bits (489), Expect = 0.0
Identities = 507/513 (98%), Gaps = 1/513 (0%)
Strand = Plus / Minus
Query: 5 gaattctcttc-catactgggtaccgtttcaagtcccgggcatcaggcacaggagaatcg 63
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctcttcagatactgggtaccgtttcaagtcccgggcatcaggcacaggagaatcg 454
Query: 64 aatcttcacgtgtcttccagaagccaaaggaaagtgaataatgaatccagggaggtttac 123
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatcaacaagtgtcttccagaagccaaaggaaagtgaataatgaatccagggaggtttac 394
Query: 124 agtttcttagaaatcttgaaaatgtgttaaatgactgtctatgtattaatcaaaattgga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agtttcttagaaatcttgaaaatgtgttaaatgactgtctatgtattaatcaaaattgga 334
Query: 184 gagacagggctagcattgtaaattgatggtagaaaacttgctaaacatgtaagtgggtct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gagacagggctagcattgtaaattgatggtagaaaacttgctaaacatgtaagtgggtct 274
Query: 244 agggtcaaggttcaggagtcagacctttagctgtgaagggctatttcacttgtataggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agggtcaaggttcaggagtcagacctttagctgtgaagggctatttcacttgtataggaa 214
Query: 304 aactacagcaaaattaaaatttttaattttcaaaaaattaaaaataagatttctttaact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aactacagcaaaattaaaatttttaattttcaaaaaattaaaaataagatttctttaact 154
Query: 364 tcccccaaaggaatgcgacttcaccaacaattggttatacctgttcgtattttatctcag 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tctcccaaaggaatgcgacttcaccaacaattggttatacctgttcgtattttatctcag 94
Query: 424 ctttacttctgttacttttaattttttaaaaagtaatcttacattcctcctccgttctgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ctttacttctgttacttttaattttttaaaaagtaatcttacattcctcctccgttctgt 34
Query: 484 ctccagtttgaatccatattaatttatctcatc 516
|||||||||||||||||||||||||||||||||
Sbjct: 33 ctccagtttgaatccatattaatttatctcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space: 458942
Effective search space used: 458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_a19.g1 MSMg01no185_a19.g1 CHROMAT_FILE:
MSMg01no185_a19.g1 PHD_FILE: MSMg01no185_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:39 2005
(287 letters)
>mm_chr1_66416049_66416735
Length = 687
Score = 555 bits (287), Expect = e-162
Identities = 287/287 (100%)
Strand = Plus / Plus
Query: 1 actaagacaaatacttcagtgagcgggcgccagagcctgagtcatttcaactcactgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagacaaatacttcagtgagcgggcgccagagcctgagtcatttcaactcactgtga 260
Query: 61 gcagagcatgaggcaagacccagtagtaatcaatccgggatgaagtgcgaagggcaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagagcatgaggcaagacccagtagtaatcaatccgggatgaagtgcgaagggcaaagc 320
Query: 121 aagacaaaggacattttcagtgccacagtgctgtagctctctaactccttgatacctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacaaaggacattttcagtgccacagtgctgtagctctctaactccttgatacctgag 380
Query: 181 agcagtgtttaggtaagtcctgatggattactctttagggacatatagatacaattatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagtgtttaggtaagtcctgatggattactctttagggacatatagatacaattatag 440
Query: 241 tgagtcttattttggaaacaagaaatttcaaggaatctttgttgaca 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtcttattttggaaacaagaaatttcaaggaatctttgttgaca 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
