BAC Information

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BAC

Clone NameMSMg01-185D24
Chromosome1 (Build37)
Map Location 87,483,116 - 87,483,440
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185D24.T7 (MSMg01no185_d24.b1)MSMg01-185D24.TJ (MSMg01no185_d24.g1)
ACCAG377299AG377300
length753733
length of high quality
(start - end)		329 (61 - 389)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no185_d24.b1 PHD_FILE: MSMg01no185_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:54 2005CHROMAT_FILE: MSMg01no185_d24.g1 PHD_FILE: MSMg01no185_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTGCCCTTNNNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTTTGAATCAGTTCTTGGGAAATTAAGCTAG
GGAACAGATAATGGTAGAGCCTAAGGATGACTTCTGGGCATGAGAAACCA
AGAATTTGTGAAGGGAAAACAAGAACCAGACATGAGGAGATAAAGACTTG
AGCAGCTGGAGTATTGGATCGTTTGCCTGCTATCCCAGCACTTGAAAGCA
TCCAGGACCATGGAAAGAACTGAGGTGGGAGAAAACGGACTTGGAAGGCT
TCCAGGAAGCAATGGGGAAACCAATGGATGACAGTATCAGAAAGGTCACA
GTGTTTTTATCATTATTATCATTATCATATTTATGACATTCACCACCATG
TGGAGGTTGGGCATATGTTCCATGGTACACATGGAGAGGCCAAGAAACAA
CTTGTGAGTTGGGTCTGTTCTTCCACCATATGGGTTTCAGGGATCAAATT
CAGTTCACCAGGCTTGGTGGCAAGGACCTTGATCTTGTGAGCCACTTGCC
AGACCAATGACACATTTTAATTGACTGGTGACATCTCAGAGTAGAAGATG
GGAGAGCGCCAAAGGCGAGGTGGGAATAGGTAGTCAGGTGGACATCCAAC
CTGCTTGCCACCATGAGGTTTAAGTGACAGATAATGGATGTTGCCTGCCT
ATGATTTACCAGGAAGCATTTTCCTTCTGGGGGAGGCTAGTGTACCAGTC
ACC

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATATCTGCTTGCTATAAGTAAA
GACAATAAGCTAGCTGGGTGGGATCCCCACCACTCCTGGGCTTCAACTAG
CTCTGTCCCAAGCTAACCTTGAATTCAGGAATCTGCCTGAGTAGTCCAAA
CAATAAACTTAGCTGGAGGGATCTTGCCATGAAATCACCACTCTCTAAAT
CTTGTTATTTCCTTCCTTAATATCTTTCTGACAAGGTGGCTCACACTGCA
GCAGCCTCTGTTTTTTAGGTCCATGAAGCCCCCTTCATGGAATTCATATT
GCATCCTTATATTTTGCTTATTTGAGAATACATTGAACTCATGTTGCCAA
ACTCATTCTATGAGACAGTTTTATTCATATCCTTCACCTGTTTGACTATA
TTTTCTTGTATTTCTTTATGTTTATTTGCTTCCTCTTTTAATGCTTTTAC
TTGCTTGAATGTATTTTCATGTATTTCCTTAAGGAATTTATTCATTTCTT
CTTTAAAGGCTTTTATTAGCTTCATTAGATTGAATTTAAAATCCTCTTCT
TGTGCTTCAGTTTCATTAGGATATCCAGGGTTTGTTGTAGAAGGATAGCT
GCGCACAACTCACCTCTGTAGGCTGTCCCAGATGGATCAATTGGGATAGT
GGGCAACTCTTACTGGAATGGGATTGGTTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_d24.b1 MSMg01no185_d24.b1 CHROMAT_FILE:
MSMg01no185_d24.b1 PHD_FILE: MSMg01no185_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:54 2005
         (329 letters)



>mm_chr1_87482912_87483640
          Length = 729

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaa 264

                                                                       
Query: 65  ggatgacttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatgacttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacatg 324

                                                                       
Query: 125 aggagataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagataaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttg 384

                                                                       
Query: 185 aaagcatccaggaccatggaaagaactgaggtgggagaaaacggacttggaaggcttcca 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 aaagcatccaggaccatggaaagaaccgaggtgggagaaaacggacttggaaggcttcca 444

                                                                       
Query: 245 ggaagcaatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaagcaatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcatt 504

                                    
Query: 305 attatcattatcatatttatgacat 329
           ||||||||||||||| |||||||||
Sbjct: 505 attatcattatcataattatgacat 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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