BAC Information

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BAC

Clone NameMSMg01-185F05
Chromosome1 (Build37)
Map Location 65,166,854 - 65,167,393
singlet/doubletsinglet
Overlap geneD630023F18Rik
Upstream geneKlf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga
Downstream geneIdh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185F05.T7 (MSMg01no185_f05.b1)MSMg01-185F05.TJ (MSMg01no185_f05.g1)
ACCAG377350AG377351
length747745
length of high quality
(start - end)
544 (62 - 605)558 (93 - 650)
definitionCHROMAT_FILE: MSMg01no185_f05.b1 PHD_FILE: MSMg01no185_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:59 2005CHROMAT_FILE: MSMg01no185_f05.g1 PHD_FILE: MSMg01no185_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTGTTTTTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCAGTTTACACCCTGCCCATGTGTTATCCTC
CTGCTAGGAGGGATGTGTCTCTTTTCCTCAGTTTCCCTCTGAGTAACGCC
AAGTTTGTAGCTAAGCCTGCCTCTCTGTGTGCCCACATCACGAAGAGGCA
TCAAACAGATCATTACTGGACTTCTCAAACTTTAATGAGGTATTGTTACA
GCGCCATTTCTATTCTGGAGGTCAAGGCTGGCTTTGTATTTCTAGTGAGC
ACGACCAGTGTGACTAACCCAGGCATCAAACTCCAGATGAGGTTTCAACA
GAATGACCAGGGTCCAAAACCCTTATTTATTATTTAGGCTGGCATTTATT
CTCTGGAGAATGTCATTACATGATTGAGGCACCCTTAGAACCTTAAACGA
ACCCAGATCTACCTTTGTTTGCCCAGATGAGGGGTGGAAAGAAAATGTTA
CAAATAAGTGGTAAGCATATTTACTAAGTAAAAAGTTACAAACAACCAAG
GAAAAGGTCATCACTGTAGTAAGAATCAATATGCAAATTGACTCTCAGTT
TTGTACCAGGTGTGACAGTAATGTTAGCCGTTTTTCTTTCTCTTCCCATT
TTTTTTACTTCCTCCCCCTTTTCTCCTCTTTTTTCTTCCCTCATCTTCAT
TTTTCTCTTTCTTTTTACTCATTACCCTTTTCGACACTTTTTCTCTT
CTTTTGCCTNCNCCTCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTA
GCTCTGTACCCCATTTTTAAATATGGTTATTTGGTTTTCTGGAGTCCAAC
TTCATGAGTTCTTTATATATATTGGATATTAGCCCCCTATTATATTTTGG
ATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCGTTTTGTCTTATTGA
CAGTATCCTTTGCCTTACAGAAGCATTGCAATTTTATCCATCCCATAAAC
AACCACCAAACCCAGACACTATGGCAGATGCCAAAAAGAGCCTGCTGACA
GGAAGCTGATATACCTGTCTCCTGAGAGGCTCTGCCAGTGCCTGACAAAT
ACAGAAGTGGATGCTCACAGTCATTCATTGCACCGAGCACAGGGTCCCCA
ATGAAGGAGCTTGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAGCCCC
ATAGGAGGAACAACAATATGAACTAACCAGTAATGCCCAGAGCTCCCTGG
GACTAAATCACCAACCAAAGAAAACACATGGTGGAACTCATGGCTCCAGC
TGCATATGTAGCAGAGGATGGCCTAGTTGGTCATCAATGGGAGGAGAGGC
CCTTGGTCCTGTGAAGGTTTCTATGCCCCAGTGTAGGGTAATGCCAGTGC
CCAGTCACATGACTGGAATGGGTGTTTTGTTTATCCCTCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_f05.b1 MSMg01no185_f05.b1 CHROMAT_FILE:
MSMg01no185_f05.b1 PHD_FILE: MSMg01no185_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:59 2005
         (544 letters)



>mm_chr1_65166650_65167593
          Length = 944

 Score = 1013 bits (524), Expect = 0.0
 Identities = 536/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtttacaccctgcccatgtgttatcctcctgctaggagggatgtgtctctttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattcagtttacaccctgcccatgtgttatcctcctgctaggagggatgtgtctctttt 685

                                                                       
Query: 65  cctcagtttccctctgagtaacgccaagtttgtagctaagcctgcctctctgtgtgccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctcagtttccctctgagtaacgccaagtttgtagctaagcctgcctctctgtgtgccca 625

                                                                       
Query: 125 catcacgaagaggcatcaaacagatcattactggacttctcaaactttaatgaggtattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 catcacgaagaggcatcaaacagatcattactggacttctcaaactttaatgaggtattg 565

                                                                       
Query: 185 ttacagcgccatttctattctggaggtcaaggctggctttgtatttctagtgagcacgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttacagcgccatttctattctggaggtcaaggctggctttgtatttctagtgagcacgac 505

                                                                       
Query: 245 cagtgtgactaacccaggcatcaaactccagatgaggtttcaacagaatgaccagggtcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagtgtgactaacccaggcatcaaactccagatgaggtttcaacagaatgaccagggtcc 445

                                                                       
Query: 305 aaaacccttatttattatttaggctggcatttattctctggagaatgtcattacatgatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaacccttatttattatttaggctggcatttattctctggagaatgtcattacatgatt 385

                                                                       
Query: 365 gaggcacccttagaaccttaaacgaacccagatctacctttgtttgcccagatgaggggt 424
           |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaggaattcttagaaccttaaacgaacccagatctacctttgtttgcccagatgaggggt 325

                                                                       
Query: 425 ggaaagaaaatgttacaaataagtggtaagcatatttactaagtaaaaagttacaaacaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaaagaaaatgttacaaataagtggtaagcatatttactaagtaaaaagttacaaacaa 265

                                                                       
Query: 485 ccaaggaaaaggtcatcactgtagtaagaatcaatatgcaaattgactctcagttttgta 544
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 ccaaggaaaaggtcatcactgtagtaagaatcaacatgcaaattgactctcagttttgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)