Query= MSMg01no185_g04.b1 MSMg01no185_g04.b1 CHROMAT_FILE:
MSMg01no185_g04.b1 PHD_FILE: MSMg01no185_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:04 2005
(312 letters)
>mm_chr1_85159389_85160100
Length = 712
Score = 572 bits (296), Expect = e-168
Identities = 305/308 (99%)
Strand = Plus / Plus
Query: 5 gaattcccagtagggtgtcacagttttgggaacccaaactgcagagcattgtgagctgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccagtagggtgtcacagttttgggaacccaaactgcagagcattgtgagctgcc 264
Query: 65 acgtggtgctgccaattgactctggatcccctggaagagcaaaaagtgctcttgaactgc 124
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acgtggtgctgggaattgactctggatcccctggaagagcaaaaagtgctcttgaactgc 324
Query: 125 ggagccatcttttcagtctcacaaatcagatctcttatttcatcttaagactaaacaaat 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagccatcttttcagtctcacaaatcagatctcttatttcatcttaagactaaacaaac 384
Query: 185 agcccttgatctcaaatgccttttctcatttcatctttccccatcaaacatactctctag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcccttgatctcaaatgccttttctcatttcatctttccccatcaaacatactctctag 444
Query: 245 aactcaaccagacactcagggaaatgcagttggcaaagcttcctctctccatgagttcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aactcaaccagacactcagggaaatgcagttggcaaagcttcctctctccatgagttcag 504
Query: 305 caacttcc 312
||||||||
Sbjct: 505 caacttcc 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_g04.g1 MSMg01no185_g04.g1 CHROMAT_FILE:
MSMg01no185_g04.g1 PHD_FILE: MSMg01no185_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:04 2005
(425 letters)
>mm_chr1_85101522_85102353
Length = 832
Score = 716 bits (370), Expect = 0.0
Identities = 414/432 (95%), Gaps = 7/432 (1%)
Strand = Plus / Plus
Query: 1 cacagacagtgcaagggtagcaaagattaatgcagccatccctacgcccgtcagattgat 60
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 201 cacagacagtgcaagggtagcaaagatcaatgcagccatccctacgcctgtcagattgat 260
Query: 61 aaccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctcc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aaccacaacaaaaatgtcttcaaagacagaaactgcaaatactcagagacagatacctcc 320
Query: 121 acctgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagac 380
Query: 181 acagcacactgttggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctt 240
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 acagcacactgctggtatcactagtggacttgatcaaatgtcacaggagaaatggtgctt 440
Query: 241 tcttaggacatctgcaggagcagaagtagccctgactgagtccctgttgtgggcatcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tcttaggacatctgcaggagcagaagtagccctgactgagtccctgttgggggcatcaca 500
Query: 301 c--cttcctctcatcttttctatttttattttgaattatgtatgcacgactctgtctcag 358
| |||| |||||||||||||||||||||||||||||||| ||| | || ||||||||||
Sbjct: 501 caccttcatctcatcttttctatttttattttgaattatgcatgtatgagtctgtctcag 560
Query: 359 tgtgcttcctgcacgcaagtacagtgtc-----catggaaggcagaaaaggctgtctgat 413
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 tgtgcttcctgcacgcaagtacagtgtcgtgtccatggaaggcagaaaaggctgtctgat 620
Query: 414 ctggagttggca 425
||||||||||||
Sbjct: 621 ctggagttggca 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 832
Length adjustment: 9
Effective length of query: 416
Effective length of database: 823
Effective search space: 342368
Effective search space used: 342368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
