CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTCAGAAACCACAGGGTACAAAGAGAAAACTAACTTGGCCAGC
ATTCCTTTAATCTCTATATGTGTACATATGCTACATATGTGTCTATATAT
AGATATACACACACATACACACACACACAGGAATTATGAAAGTAAAAATA
AAAATGTAAGGAACAAATACATTTTGCAGATAAGTGTATTCCACATGAAG
TACCAAGTTATAGAAGTCATTTTTATAAACAGCCAAGAGATTGATTACTA
TGGTGGTCAAGGAAAACAACACCTTGCAAAATACAACCCCCAAAACACAT
CTGGACACATGTGAATGCCTCTTACAAAAATAAGAAATTGTCATATAATT
ATATGGAAAATTGTACCCAAGGTGCCTGTGTTTATTTATTTTTCTCAATC
CTTATGGAAAAGAGATACTTTCATCTTTTGTACAACCTCATATCAAAATT
TCACTTTTCAAGAAAACAACTTTCTGAGCCTAAAATTTTGAGACAGAACA
AAACATTGTTCCATATCACAAATGATTTCATCAAAATACTTATTATCACC
TTACTCTGGGAAATTAAATATAATCAAATTTATTTAAATTATCTGTGTGC
CACTAAAAATTAGCTAGTATTTTGAAAACTAAATTAAGTATTGGTTTAGT
GGGAGTTTTCTGTTTGGTGG

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACGACAAGGAAGCAGGAATGGGT
GGATTAATGACCAGCCCCACAACCCATGGGATGGGGCATTCCTCCCTTTC
CCCCCCCCCTTNTCTCTCCGNCCTCCTTTTTCCCCCTCCCCCCCTTCCCC
TCCCCTCCCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCCCTCTTTTTTTC
NTCTTCCCTTTCCCTCCTCCCCCCCCCCCCCTCCCTCCTTCTCCTCCCCT
CCCTCTCCTCCCCCCCCTCCCAACCTTTTTTTTTCTTCCCTTCCCTTTCC
CCTCCCCCCGNATATTTTTTTTTTTCCCCCTTCGTCCCCCCCCTAACCCC
CCTCCCCCTCCTCCCCTTTTTTTTTCCCCCCCCCCTTTCCCCCACCACCC
CCCTTCCNCCCCTCCCCCCCTCCTCCCTTCTTCTCTCCCCCCTTTTTCTC
CTCCCCCTTCTCTTTTCCCCCCCCCCTCCCCCCCCCCTCCTTACTTCTCC
CCCCCCCCCTCCCCTTTTGTTTCTCCCCCCCTTCATCCTCCCCCCTCCCC
CCCCCTTCCATCCTTTCCCCCCTCCCTCCCCCCTTCTTCCCTCCCCCCCC
GCCTCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTTCCCTCTCCCCCCCTC
CCCCCCCCCCCCCCCCCCTTCCCCCCCCTTCCCCCTCTCCTCCCCCCTTC
CCCTTTTCCCTCCCCCCCCCCTCCCCCTCCTTCCCTCGG

Query= MSMg01no185_k03.b1 MSMg01no185_k03.b1 CHROMAT_FILE:
MSMg01no185_k03.b1 PHD_FILE: MSMg01no185_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:23 2005
         (671 letters)



>mm_chr1_81153339_81154409
          Length = 1071

 Score = 1220 bits (631), Expect = 0.0
 Identities = 658/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatctcagaaaccacagggtacaaagagaaaactaacttggccagcattccttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gaattccatctcagaaaccacagggtacaaagagaaaactaacttggccagcattccttt 838

                                                                       
Query: 65  aatctctatatgtgtacatatgctacatatgtgtctatatatagatatacacacacatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 837 aatctctatatgtgtacatatgctacatatgtgtctatatatagatatacacacacataa 778

                                                                       
Query: 125 acacacacacaggaattatgaaagtaaaaataaaaatgtaaggaacaaatacattttgca 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 777 acacacacacaggaattatgaaaataaaaataaaaatgtaaggaacaaatacattttgca 718

                                                                       
Query: 185 gataagtgtattccacatgaagtaccaagttatagaagtcatttttataaacagccaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gataagtgtattccacatgaagtaccaagttatagaagtcatttttataaacagccaaga 658

                                                                       
Query: 245 gattgattactatggtggtcaaggaaaacaacaccttgcaaaatacaacccccaaaacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gattgattactatggtggtcaaggaaaacaacaccttgcaaaatacaacccccaaaacac 598

                                                                       
Query: 305 atctggacacatgtgaatgcctcttacaaaaataagaaattgtcatataattatatggaa 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atctggacacaagtgaatgcctcttacaaaaataagaaattgtcatataattatatggaa 538

                                                                       
Query: 365 aattgtacccaaggtgcctgtgtttatttatttttctcaatccttatggaaaagagatac 424
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aattgtaataaaggtgcctgtgtttatttatttttctcaatccttatggaaaagagatac 478

                                                                       
Query: 425 tttcatcttttgtacaacctcatatcaaaatttcacttttcaagaaaacaactttctgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttcatcttttgtacaacctcatatcaaaatttcacttttcaagaaaacaactttctgag 418

                                                                       
Query: 485 cctaaaattttgagacagaacaaaacattgttccatatcacaaatgatttcatcaaaata 544
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 417 cctaaaattttgagacagaacaaaacattgttccatatcacaaatgattttatcaaaata 358

                                                                       
Query: 545 cttattatcaccttactctgggaaattaaatataatcaaatttatttaaattatctgtgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cttattatcaccttactctgggaaattaaatataatcaaatttatttaaattatctgtgt 298

                                                                       
Query: 605 gccactaaaaattagctagtattttgaaaactaaattaagtattggtttagtgggagttt 664
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 297 gccactaaaaattagctagtattttgaaaactaaagtaagtattgatttagtgggagttt 238

                  
Query: 665 tctgttt 671
           |||||||
Sbjct: 237 tctgttt 231


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)