BAC Information

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BAC

Clone NameMSMg01-185K05
Chromosome1 (Build37)
Map Location 193,021,026 - 193,021,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3
Downstream geneNenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185K05.T7 (MSMg01no185_k05.b1)MSMg01-185K05.TJ (MSMg01no185_k05.g1)
ACCAG377569AG377570
length698808
length of high quality
(start - end)
325 (11 - 335)---
definitionCHROMAT_FILE: MSMg01no185_k05.b1 PHD_FILE: MSMg01no185_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:23 2005CHROMAT_FILE: MSMg01no185_k05.g1 PHD_FILE: MSMg01no185_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTGGGAGAGGATCCGCGGAATTCAAGAGTATATGTTATACCCC
AAACTTTGAATTCACCATTAAACACAATTGTTAAGCTACCGGTAAGGACA
CGTAGATTAAGAAAGATCTGTTTACTCAGGTGACACAAGATCTCAGCACC
TGCAACTGGATCCACCGAGACGAGGGCTCCTTGATCCTCAGAAGTGTCCT
CTGCATTGCCTAAGTGCCTGGGACACATGACTTTTTTTTTTTAAGATTTA
TTTATTTCGTCTATGTGAGTACACTGTGGCTGTCTTCAGACACACCAGAA
GAAAGCATCAGATCCCCATTACAGATGGTTGTGATTCTCCATGTGCCTGC
TGGGAATTGAACTGGGACCTCTGGAAGAGCAGTTAGTGCCCCTAACTGCT
GAAGCATCTCTCTAGCCCAGGACACATGACTTAAAGCCAACAGTAAGAGG
CAGTGAAGAGACATTATCGAATGTTGCCCATATCCAGTGCTAACCTCATA
AGGTGTTCAGGGAGATGCCATTAAGCTTATGAGGCCACTCAAAGGAGTGC
CTTGGGAATCACATTTTCTGAGCAAAGCTTGTATCGTAAACGGTGCCACT
GTGGGAAAAAAATTGGAGCAGCTGTGGCTCCCTCCAAATTTAAATTGAAT
TGAAGTTTTAAACATATTTGTAAGTTGGGTATGGTGGACCAGGCCTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCAGCTTTTGAAAGTTAAAACTCAGAAGAGTAGAAGAGAGTTAAG
TTCCAAGAGCTGGGGGCAGGGGCGGGGGTGGTGGTGGTGCACAGCCCCCC
CTTCCCTTTTCTTCTNTCTCTCCCCTCCTTTCCTTTTCTTTTCTTTCTTT
CCCCCTCTCCTTCTCCTCCCCCCCCCATCCCTCCCACTTTATTCTCCGAC
CCCCCCCCCCTCCCCTCCTTCCTCCTTCCTCCCCTTCCTCCCCCCCCTCC
CCTTCTTTTTTTCTCTCCCCCCTCCTTTTCTCCACACACCAAATTTTCAG
TCCTCCCCATAACTATGCCCCCATATTATTTCCTTTCTCCTCCCCCTCTT
TTTTTCCCCCCCCCCCTCTCAAAAAACAAATTCCCCTCCCCCCTCCTTCC
TCCTTCCTCCCTCTTTCTTTCCCCCCCCTTTCTTCTCTCTCTCTTTTCCC
TACTCCTCCCCCCCCTCCTCCCGTCCCTCTATCATTTCTTTCTTCTCTCC
TCCCTTTTCTTTCTGTTTTCTTCTTTCTCCTGCTCCCTTCCTCTCTTTCC
TCCCCCTCTTCTTTCTTCTCCCTCTTTTTCTCCTCTTCTCTTTTCTCTTG
CCCCCCCTTCTGTCCTCCTCCCTCCCCCCTCTCTCTCACCCTCTTCTCTT
CTCCCTCCTCCTCCTCCCCCCCACTCCTTTCTTCCCCCCACTCTTCTCTT
CCCTTCTTCCCCCTTCTCTTTTCTTCCTTCCCTCCCCCTTTCCCTTTCTC
CCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_k05.b1 MSMg01no185_k05.b1 CHROMAT_FILE:
MSMg01no185_k05.b1 PHD_FILE: MSMg01no185_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:23 2005
         (325 letters)



>mm_chr1_193020813_193021537
          Length = 725

 Score =  555 bits (287), Expect = e-162
 Identities = 305/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 14  ggaattcaagagtatatgttataccccaaactttgaattcaccattaaacacaattgtta 73
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 214 ggaattcaagagtatatgttatactccaaactttgaattcaccattaaacacaattgtta 273

                                                                       
Query: 74  agctaccggtaaggacacgtagattaagaaagatctgtttactcaggtgacacaagatct 133
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agctaccggtaagaacacgtagattaagaaagatctgtttactcaggtgacacaagatct 333

                                                                       
Query: 134 cagcacctgcaactggatccaccgagacgagggctccttgatcctcagaagtgtcctctg 193
           ||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 334 cagcacctgcaactggacccacagagacgagagctccttgatcctcggaagtgtcctctg 393

                                                                       
Query: 194 cattgcctaagtgcctgggacacatgactttttttttttaagatttatttatttcgtcta 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cattgcctaagtgcctgggacacatgactttttttttttaagatttatttatttcgtcta 453

                                                                       
Query: 254 tgtgagtacactgtggctgtcttcagacacaccagaagaaagcatcagatccccattaca 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgtgagtacactgtggctgtcttcagacacaccagaagaaagcatcagatccccattaca 513

                      
Query: 314 gatggttgtga 324
           |||||||||||
Sbjct: 514 gatggttgtga 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)