BAC Information

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BAC

Clone NameMSMg01-185L23
Chromosome1 (Build37)
Map Location 89,597,022 - 89,597,334
singlet/doubletsinglet
Overlap geneInpp5d
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185L23.T7 (MSMg01no185_l23.b1)MSMg01-185L23.TJ (MSMg01no185_l23.g1)
ACCAG377641AG377642
length766749
length of high quality
(start - end)
317 (63 - 379)287 (92 - 378)
definitionCHROMAT_FILE: MSMg01no185_l23.b1 PHD_FILE: MSMg01no185_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:32 2005CHROMAT_FILE: MSMg01no185_l23.g1 PHD_FILE: MSMg01no185_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCAAAANNNTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCACTGGCCTTGGGCTCCAGCAGTTCTCTC
TTCTGTCTACTTCTCTGTGGCTTTGAGCCAGGCTCTGGGCCCCTGCCCTG
GTGAGTGTGGAGCTGTGGCAGGCCTTCCTCAGGAGGCTTAGGATGGAAAC
TCTTCTCATGCTCCTACCTGCCTGCTCATTCCCAGGGAGGAAAGATGTCC
CCTGGGGGTCCCTAGTGAGGAAGGCATGGTGAGCTGGCTGCAGAGCTATG
ATGGTGGCTGGAAGCCCAAAGGGGACTGAGGGACATGGGTCATATGGAAA
GATGCTTGGGATAAAGGGACAACTGAGGTTTTTTCTCAGCTACCCCTGAT
GTGCAATCTCCTCTCAGCCGCTTCCCTAGCCTCCCCCCCCGATTGAATAT
AAAACAGGGTCAGCTCCTGCTTTGCTTCCTTTGTCCCTCCCAGGACTCGA
GTGTGGGAATACATTAAAGTCCCTGCGTGGGAGGGAAGCAGGCTGCTAAC
TCTGATTTCTAGACAGAAGGGCTCTCACTGTTCCATTCCACGCTGTCTCC
TGCTTTCAATTTTATGAGTACGCAATTTCCTTGTGCCGCCTCTCTATACC
CCTTCCCGTTGTTTCATCCGTCTCCCACCTTTTCCTGCTCATTTTGACTT
TCCCTCGTCCCTTTTTCCCCCCTTTTGTTTTCCTCGACTATCCCTTGTCC
CTCTTTTTTTTCCTTT
CCTCTTCCNNNTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATCATT
CTTAGGCTTAGAATCCATGATTATCAGGGCAGGGAACACGGAAGCAGGCA
GGTAGCTGAGAACTTACATCCTGATCCTTTAACAACCTCAATGTCTACCC
CCAGTCACACACCTCCCCAACAAGGCCACACCTCCTAATCTTTCCCAGTT
TTACCAACTGGGAACCAAGTGTTTGAACATATGAGCCTATGAGAAACATT
CGCATTCAAACCACCACAATGTGGAAGACTTTGATGATATTTTATGAAGA
AAGCAAACTTTAGAATAACATAAAGAGTATTATTTTATCCCCCCCCCCCA
TTTAAAGCTATATATACACACACATATATACATATACACACATACACTCA
CAATCTTTTATGCATGTGTTTTAAAATATTTTATAAATAAGAATAAGTCT
AAGAAAGTCATGGATGATTGGAGATATATTTTTTTTCATTCTATATCTTC
TGTGTGTGGTGCCTTTTTTCAATATATAATCTTTTTTTGTTTGTTTTGTG
AGACAGTCTCACATAGCCCAGGCTGGCCTCCAACCCTCTATGTAACTGAG
GCTAACTTTGAACTTTTGATTCTCTTGCCTCTACCTCCTGAGTACTGGGA
TTATTGGTGTATGTCCCCTCTCCCGGCCTATTATGGCAAACGATCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_l23.b1 MSMg01no185_l23.b1 CHROMAT_FILE:
MSMg01no185_l23.b1 PHD_FILE: MSMg01no185_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:32 2005
         (317 letters)



>mm_chr1_89596819_89597534
          Length = 716

 Score =  530 bits (274), Expect = e-155
 Identities = 304/314 (96%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactggccttgggctccagcagttctctcttctgtctacttctctgtggctttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcactggccttgggctccagcagttctctcttctgtctacttctctgtggctttg 457

                                                                       
Query: 64  agccaggctctgggcccctgccctggtgagtgtggagctgtggcaggccttcctcaggag 123
           |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 456 agccaggctctgggcttctgccctggtgagcgtggagctgtggcaggccttcctcaggag 397

                                                                       
Query: 124 gcttaggatggaaactcttctcatgctcctacctgcctgctcattcccagggaggaaaga 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 396 gcttaggatggaaactcttctcatgctcctacctgcctgttcattcccagggaggaaaga 337

                                                                       
Query: 184 tgtcccctgggggtccctagtgaggaaggcatggtgagctggctgcagagctatgatggt 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 336 tgtcccctgggggtccctagtgaggaaggcatggtgagctggctgcagagctgtgatggt 277

                                                                       
Query: 244 ggctggaagcccaaaggggactgagggacatgggtcatatggaaagatgcttgggataaa 303
           ||||||||||||||||| |||  |||||||||||||||||||| ||||||||||||||| 
Sbjct: 276 ggctggaagcccaaaggagaccaagggacatgggtcatatggagagatgcttgggataa- 218

                         
Query: 304 gggacaactgaggt 317
           ||||||||||||||
Sbjct: 217 gggacaactgaggt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)