BAC Information

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BAC

Clone NameMSMg01-185N02
Chromosome1 (Build37)
Map Location 49,523,248 - 49,523,536
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
Downstream geneLOC100041981, EG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185N02.T7 (MSMg01no185_n02.b1)MSMg01-185N02.TJ (MSMg01no185_n02.g1)
ACCAG377690AG377691
length747762
length of high quality
(start - end)
686 (62 - 747)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no185_n02.b1 PHD_FILE: MSMg01no185_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:37 2005CHROMAT_FILE: MSMg01no185_n02.g1 PHD_FILE: MSMg01no185_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTGTTTNNNNTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTCAACTGAAAATTACCAAATGGCTGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCTTGGGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTTCTGAAACTGGAACACT
ATTCCATTGCTGGTAGGATTGCAAGCTGATACAACCCCTCTGAAAATCAG
TCTGGTGGTTCAAAGAAAATTGGACATAGTAGTACTGGAGAATCCAGCAG
TACCTCTCCTGGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGGAC
ACACGCTCCACTATGTTCATAGCAGCCTTATTTTTAATAGCTAGCAGCTG
GAATGAACCCAGACATCCCTCAACAGAGGAATGGCTATAGAAAATGTGGT
ACATTTACATAATGGTGTACTACTCAGGTATTAAATGCAGTAAATTTATG
AAATTCTTAGGCAAATGGATCTTGAGGATATCATCCTGAGTGAGGTAACT
CAATCACAAAAGAACTCACATGATATGCACTCACTGATAAGTGGATATTA
GCCTAAAACTTAGACTAACCAAGATACAATTTGAAAAAAAAACACATGAA
ACTAAGGAGAAGGAAGACCAAAGTGTGGATACTTTGTTCCTCCTTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGATATTGTCCCCCAGTCTTATC
TGTCATTGACATTTTTAATCTGCTGCATAAGGCCTTTGTGTAATGTAGTG
GTAGTGTACTATGCTTTTTTGGTACAATTTTTAATTTCATTTAATCTTAT
TTGATGAATTTTCCCAGGTTTTGAACAGTTTTATTCATTTCCTTCAAGTA
TTTGATTGTATTTTCTTATAAATTTTTGAGAGACTTATTTATTTCCTCTT
TAAAGGCATCTATGATTTTTATAAGGTTTGATTTAAGGTCATTTTCTTGT
GCTTGGGTTATGGTAGGATATCCAGAGCTTGCTATAGTGTCATAGCTTTG
ATCTGAAGGTGTCAAATTGTCCTGGCTCTTAATTGACATTTTCTTTTAAG
TACTTAATTTTTTATTTTGTGTGCATTCTAGATATTGACCACCCAGCCAG
AGCTCTTACTGACATTTTTACTCCACTGTATAAACCATCTTTGTACTGTA
ATGGTAGTATCCATAGGCTGTTGGATGTCACTTTAATTGCATTTAATCCT
ATTTGATGATCCTTGTCAAACATTCTCTTTGCTATCTACGTCTACTTTGG
GCTTTTGCAATCACTTTCGCCTTAATCTTTATTTATTCGTTCTTATTTTT
TTCTCGTCCATTTATTTACGATATTTTCGATCTCTATTTTATGTTAATTT
TATATTTTCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_n02.g1 MSMg01no185_n02.g1 CHROMAT_FILE:
MSMg01no185_n02.g1 PHD_FILE: MSMg01no185_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:37 2005
         (291 letters)



>mm_chr1_49523048_49523737
          Length = 690

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%), Gaps = 2/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatattgtcccccagtcttatctgtcattgacatttttaatctgctgcataaggcctt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagatattgtcccc-agtcttatctgtcattgacatttttaatctgctgcataaggcctt 259

                                                                       
Query: 61  tgtgtaatgtagtggtagtgtactatgcttttttggtacaatttttaatttcatttaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtgtaatgtagtggtagtgtactatgcttttttggtacaatttttaatttcatttaatc 319

                                                                       
Query: 121 ttatttgatgaattttcccaggttttgaacagttttattcatttccttcaagtatttgat 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 ttatttgatgaattttcccaggttttgaacacttttattcatttccttcaagtatttgat 379

                                                                       
Query: 181 tgtattttcttataaatttttgagagacttatttatttcctctttaaaggcatctatgat 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtattttcttataa-tttttgagagacttatttatttcctctttaaaggcatctatgat 438

                                                              
Query: 241 ttttataaggtttgatttaaggtcattttcttgtgcttgggttatggtagg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttataaggtttgatttaaggtcattttcttgtgcttgggttatggtagg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)