BAC Information

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BAC

Clone NameMSMg01-186M15
Chromosome1 (Build37)
Map Location 4,952,964 - 4,953,236
singlet/doubletsinglet
Overlap geneRgs20
Upstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829
Downstream geneAtp6v1h, EG636659, Oprk1, Npbwr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186M15.T7 (MSMg01no186_m15.b1)MSMg01-186M15.TJ (MSMg01no186_m15.g1)
ACCAG378363AG378364
length774793
length of high quality
(start - end)
320 (45 - 364)298 (78 - 375)
definitionCHROMAT_FILE: MSMg01no186_m15.b1 PHD_FILE: MSMg01no186_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:53 2005CHROMAT_FILE: MSMg01no186_m15.g1 PHD_FILE: MSMg01no186_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTCCTCCCACACCATGCCTGCCTGGGTGCTGCCATGATCCCA
CCTTAATGATAATGATCTGAACCTCTGAACTTGTAATCCAGCCCCAATTA
AATGTTGTCATTTATCAGAGTTGCCTAGTCATGGTGTCTGTTCATAGCAA
TAAAACCCTAATTAAGACAAACACTATCATTTGGACAAAGCAGCAGCCTA
CAGAAATGGGAAAAGATTTTTACCCATGCCACATCTGATAGTGAATTAAT
ATCTAAAATATATAAAGAACTTGAATAATGAAAAAATCCAATTAAAAAGT
GGGGTACAGACTTATTTTTAATTCTCTACCACGGAAATTCAAATGGCTGA
GAAACATTTATGTTCCCCACCCATCAGAGAAATGAAAATCAAAATTACTT
TGAGGTTTCATCTTACACCTGTCAAAGTGCCTAAGGCCAATAACACACGT
GCCAGACAGCTCATTCTGGCAAAGATGTGGAATAAAGAGAACACTGCTTT
ATTGTTTGTAGGAGTTAAAAACCTATATAGCCTCTATGTAATTCAGAATA
GCTTGTAAAAAAAGTTAGATTCACTCTACCCCTTGATTTTACTATATCTA
CTCTTGGATATTTACCTTATTTATTGTTTCTTCTCTTTTTTAATTACCCT
TGGCCCTATCCTGTTTCTTTATTTATTATTTTCTTTTTATCATTTCCTTT
TGTTATTATTATTCTTTTCCTTTG
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTAACTTGCTTCTTATTTGG
CCAGAATGAGAAGAAAAGTAATGTTGTATACACATTTTATCCCAGCACCT
CTGCCTAGCATGCGTGGCTCATGAATGGATGAGTTTCCCATGAGATAGTA
TATGGCAACATAAATGTAATCTCTGTTCCCTCTTCTATGTAGGGTCTCTT
CATACCCATCTGTCTGTATCTTTAAAACTCTTTTTTCGTACAAGGAGACT
AGTTGTTGAATAATTAGGCCCACCTTCACCTAGCATGGCCTCATTTTATT
TTATACTTGACCCTATTTTTTTTCTCCCCCCCCCCCGGTANTAGGGTCAG
AACTTATGGTAGGATACCCCCCCCGACAACAAAAAAAAAACTTTGCTTTC
TTTCGCTTCTATCATTCTTTGATAATACCCTCCCGCCTCATATAGGTCTC
ATTACCTTTTACCGATTCCATATTCTCACGCACTTACATATTTTTAAAAA
AGTTGTTACCTATTAGTACATACCTTATATTCATTCCTTTACATTTTTTC
CGCTCCTTCCACATTTTTTATTTTTTTATTCCATATGCTCATTTTTCCCT
TTTTTCTTTTTTTTCCTTCACATTTTTTATTTCCGGTAATTTTTCCTTTT
CTGTCGTTTCTTATTTTCTTTCTTTTTTTTCCCTCTTTATTTTACTTTTC
CTCACACCTACATTTTTTCTTCTTACCCTCCTCCCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_m15.g1 MSMg01no186_m15.g1 CHROMAT_FILE:
MSMg01no186_m15.g1 PHD_FILE: MSMg01no186_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:53 2005
         (298 letters)



>mm_chr1_4952764_4953461
          Length = 698

 Score =  466 bits (241), Expect = e-136
 Identities = 270/291 (92%), Gaps = 18/291 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctaacttgcttcttatttggccagaatgagaagaaaagtaatgttgtatacacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctaacttgcttcttatttggccagaatgagaagaaaagtaatgttgtatacacattt 260

                                                                       
Query: 61  tatcccagcacctctgcctagcatgcgtggctcatgaatggatgagtttcccatgagata 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tatcccagcacctctgcctagcatgcatggctcatgaatggatgagtttcccatgagata 320

                                                                       
Query: 121 gtatatggcaacataaatgtaatctctgttccctcttctatgtagggtctcttcataccc 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||          
Sbjct: 321 gtatatggcaacataaatgtaatctctgttccctcttctatgtacggtct---------- 370

                                                                       
Query: 181 atctgtctgtatctttaaaactcttttttcgtacaaggagactagttgttgaataattag 240
                   ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 371 --------gtatctttaaaactcttttttcgtacaaggagaatagttgttgaataattag 422

                                                              
Query: 241 gcccaccttcacctagcatggcctcattttattttatacttgaccctattt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcccaccttcacctagcatggcctcattttattttatacttgaccctattt 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)